Requirements File?

[staniPetrox]

Hey,

I can see that you provide a docker image, but is there a possibility that you provide a requirements file?

Best regards,
Benedikt

[Thanos-DB]

Hi @staniPetrox

you can use
https://gla-my.sharepoint.com/:f:/g/personal/a_tragakis_1_research_gla_ac_uk/EpyRwXVsbXxEmTaEjl-OuFYBQBuNkz9TfRP3DFR5WUf0jg?e=abEu7d

BR
Thanos

[staniPetrox]

Hey Thanos,

this doesn't work. You need to be a Glasgow faculty member to log in as I understand? Can we do this in another way?

Thank you and all the best,
Benedikt

[Thanos-DB]

Hi @staniPetrox

it should be fixed now but just in case this is the content of the file

tensorflow==2.5.0
keras==2.8.0
matplotlib==3.3.2
medpy==0.4.0
nibabel==3.2.1
opencv-python
pandas==1.1.3
pydicom==2.2.2
scikit-image
scikit-learn

BR
Thanos

[recharladivyareddy]

Hello sir,
tensorflow 2.5 version isn't available

and if I use version 2.8
I'm getting this error.
Traceback (most recent call last):
File "/content/FullyConvolutionalTransformer/TensorFlow/main.py", line 9, in
acdc_data, train_afn, train_hdr = get_acdc(acdc_data_train)
File "/content/FullyConvolutionalTransformer/TensorFlow/utils.py", line 586, in get_acdc
data[0] = np.expand_dims(data[0], axis=3)
File "<array_function internals>", line 180, in expand_dims
File "/usr/local/lib/python3.10/dist-packages/numpy/lib/shape_base.py", line 597, in expand_dims
axis = normalize_axis_tuple(axis, out_ndim)
File "/usr/local/lib/python3.10/dist-packages/numpy/core/numeric.py", line 1397, in normalize_axis_tuple
axis = tuple([normalize_axis_index(ax, ndim, argname) for ax in axis])
File "/usr/local/lib/python3.10/dist-packages/numpy/core/numeric.py", line 1397, in
axis = tuple([normalize_axis_index(ax, ndim, argname) for ax in axis])
numpy.AxisError: axis 3 is out of bounds for array of dimension 2

thank you