Fix bug release (#35)

TieuLongPhan · web-flow · commit 10601251ed9f · 2025-08-06T15:46:16.000+02:00
* Refractor (#26) * update refractor * fix reactor * fix lint * prepare bechmark * refractor MODReactor and SynReactor * update crn * refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor * test 3 os * test * test * fix workflow * fix lint * fix win * fix win * fix win again * update smart * add synreactor implicit hydrogen * fix mcsmatcher * refractor visualization * fix conflict rdkit, upgrade to 2025.3.1 * fix lint * move aam_validator to Chem submodule * fix lint * prepare benchmark matcher * change backend rule to mod * prepare doc * add doc * update fih * update graph module doc * update doc * prepare release * . * fix doc * clean doc * fix docstring * fix tutorial * update fig * update explicit_hydrogen for its * prepare release * build doc * fix lint * fix bug in explicit hydrogen for ITS * fix build * fix * fix * fix * fix doc * update nauty canon, rule filters, change benchmark * prepare release * fix bug in nauty alg * update doc * add features for expanding its * add rule_matcher.py * add testcase rule matcher * add wildcard for smiles * add partial engine * update new features * update document * add data * update Chem features * format docstring and refractor Chem module * add auto-test pypi * create dependabot * test run yml * test * test docker * add docker * add docker * . * add readme * rename * release docker * remove redundant file * Prepare release bump version (#27) * update refractor * fix reactor * fix lint * prepare bechmark * refractor MODReactor and SynReactor * update crn * refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor * test 3 os * test * test * fix workflow * fix lint * fix win * fix win * fix win again * update smart * add synreactor implicit hydrogen * fix mcsmatcher * refractor visualization * fix conflict rdkit, upgrade to 2025.3.1 * fix lint * move aam_validator to Chem submodule * fix lint * prepare benchmark matcher * change backend rule to mod * prepare doc * add doc * update fih * update graph module doc * update doc * prepare release * . * fix doc * clean doc * fix docstring * fix tutorial * update fig * update explicit_hydrogen for its * prepare release * build doc * fix lint * fix bug in explicit hydrogen for ITS * fix build * fix * fix * fix * fix doc * update nauty canon, rule filters, change benchmark * prepare release * fix bug in nauty alg * update doc * add features for expanding its * add rule_matcher.py * add testcase rule matcher * add wildcard for smiles * add partial engine * update new features * update document * add data * update Chem features * format docstring and refractor Chem module * add auto-test pypi * create dependabot * test run yml * test * test docker * add docker * add docker * . * add readme * rename * release docker * remove redundant file * fix lint * fix bug * fix lint * add partial its beta * test publising conda * test publising conda * fix workflow * fix workflow * fix workflow * fix workflow again * tes pre-release * tes pre-release * tes pre-release * tes pre-release * tes pre-release * tes pre-release * fix meta.yaml * fix meta.yaml * fix meta.yaml * fix meta.yaml * fix meta.yaml * fix meta.yaml * publish beta * publish beta * debug * debug * debug * debug * debug * debug * debug * debug * prepare release * pass test staging, prepare release * quick fix hydrogen * prepare release * Prepare release (#30) * add partial its construction and imbaengine * add wildcard and placeholder * add testcase * add mtg * fix bug mtg * prepare release * Prepare release (#32) * add partial its construction and imbaengine * add wildcard and placeholder * add testcase * add mtg * fix bug mtg * prepare release * enhance ITSConstruction to capture hydrogen * add constraint for searching embedding * fix hydro * enhance batch reactor * add postprocess * fix cycle import and add data example * fix package contain data * fix bug release * fix bug release
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,17 +4,17 @@ build-backend = "hatchling.build"
 
 [project]
 name = "synkit"
-version = "0.0.16"
-license = { text = "MIT" }
-license-files = ["LICENSE"]
-authors = [
-  { name = "Tieu Long Phan", email = "tieu@bioinf.uni-leipzig.de" }
-]
+version = "0.0.17"
 description = "Utility for reaction modeling using graph grammar"
 readme = "README.md"
 long-description = { file = "CHANGELOG.md" }
 long-description-content-type = "text/markdown"
 requires-python = ">=3.11"
+license = { text = "MIT" }
+license-files = ["LICENSE"]
+authors = [
+  { name = "Tieu Long Phan", email = "tieu@bioinf.uni-leipzig.de" }
+]
 classifiers = [
   "Programming Language :: Python :: 3",
   "License :: OSI Approved :: MIT License",
@@ -39,28 +39,18 @@ docs = [
 ]
 
 [project.urls]
-homepage = "https://github.com/TieuLongPhan/SynKit"
-source   = "https://github.com/TieuLongPhan/SynKit"
-issues   = "https://github.com/TieuLongPhan/SynKit/issues"
+homepage      = "https://github.com/TieuLongPhan/SynKit"
+source        = "https://github.com/TieuLongPhan/SynKit"
+issues        = "https://github.com/TieuLongPhan/SynKit/issues"
 documentation = "https://tieulongphan.github.io/SynKit/"
 
 [tool.hatch.build]
-# include non-Python data files in all build targets
-include = [
-  { path = "synkit/Data/*.json" },
-  { path = "synkit/Data/*.json.gz" }
-]
+# ship your code as normal
+packages = ["synkit"]
 
-[tool.hatch.build.targets.wheel]
-# wheel also gets the same data files
-include = [
-  "synkit/Data/*.json",
-  "synkit/Data/*.json.gz"
-]
+# Force-include the entire Data directory (recursively)
+[tool.hatch.build.targets.wheel.force-include]
+"synkit/Data" = "synkit/Data"
 
-[tool.hatch.build.targets.sdist]
-# source sdist likewise
-include = [
-  "synkit/Data/*.json",
-  "synkit/Data/*.json.gz"
-]
+[tool.hatch.build.targets.sdist.force-include]
+"synkit/Data" = "synkit/Data"
diff --git a/recipe/meta.yaml b/recipe/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: synkit
-  version: "0.0.16"
+  version: "0.0.17"
 
 source:
   path: ..
