Quick Fix (#29)

* Refractor (#26)

* update refractor

* fix reactor

* fix lint

* prepare bechmark

* refractor MODReactor and SynReactor

* update crn

* refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor

* test 3 os

* test

* test

* fix workflow

* fix lint

* fix win

* fix win

* fix win again

* update smart

* add synreactor implicit hydrogen

* fix mcsmatcher

* refractor visualization

* fix conflict rdkit, upgrade to 2025.3.1

* fix lint

* move aam_validator to Chem submodule

* fix lint

* prepare benchmark matcher

* change backend rule to mod

* prepare doc

* add doc

* update fih

* update graph module doc

* update doc

* prepare release

* .

* fix doc

* clean doc

* fix docstring

* fix tutorial

* update fig

* update explicit_hydrogen for its

* prepare release

* build doc

* fix lint

* fix bug in explicit hydrogen for ITS

* fix build

* fix

* fix

* fix

* fix doc

* update nauty canon, rule filters, change benchmark

* prepare release

* fix bug in nauty alg

* update doc

* add features for expanding its

* add rule_matcher.py

* add testcase rule matcher

* add wildcard for smiles

* add partial engine

* update new features

* update document

* add data

* update Chem features

* format docstring and refractor Chem module

* add auto-test pypi

* create dependabot

* test run yml

* test

* test docker

* add docker

* add docker

* .

* add readme

* rename

* release docker

* remove redundant file

* Prepare release bump version (#27)

* update refractor

* fix reactor

* fix lint

* prepare bechmark

* refractor MODReactor and SynReactor

* update crn

* refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor

* test 3 os

* test

* test

* fix workflow

* fix lint

* fix win

* fix win

* fix win again

* update smart

* add synreactor implicit hydrogen

* fix mcsmatcher

* refractor visualization

* fix conflict rdkit, upgrade to 2025.3.1

* fix lint

* move aam_validator to Chem submodule

* fix lint

* prepare benchmark matcher

* change backend rule to mod

* prepare doc

* add doc

* update fih

* update graph module doc

* update doc

* prepare release

* .

* fix doc

* clean doc

* fix docstring

* fix tutorial

* update fig

* update explicit_hydrogen for its

* prepare release

* build doc

* fix lint

* fix bug in explicit hydrogen for ITS

* fix build

* fix

* fix

* fix

* fix doc

* update nauty canon, rule filters, change benchmark

* prepare release

* fix bug in nauty alg

* update doc

* add features for expanding its

* add rule_matcher.py

* add testcase rule matcher

* add wildcard for smiles

* add partial engine

* update new features

* update document

* add data

* update Chem features

* format docstring and refractor Chem module

* add auto-test pypi

* create dependabot

* test run yml

* test

* test docker

* add docker

* add docker

* .

* add readme

* rename

* release docker

* remove redundant file

* fix lint

* fix bug

* fix lint

* add partial its beta

* test publising conda

* test publising conda

* fix workflow

* fix workflow

* fix workflow

* fix workflow again

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* publish beta

* publish beta

* debug

* debug

* debug

* debug

* debug

* debug

* debug

* debug

* prepare release

* pass test staging, prepare release

* quick fix hydrogen

* prepare release

Author: TieuLongPhan

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "synkit"
-version = "0.0.12"
+version = "0.0.13"
 license = { text = "MIT" }
 license-files = ["LICENSE"]
 authors = [

recipe/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: synkit
-  version: 0.0.12
+  version: 0.0.13
 
 source:
   path: ..

synkit/Graph/Hyrogen/hcomplete.py

@@ -350,4 +350,5 @@ def add_hydrogen_nodes_multiple_utils(
                 # conjugated=False,
                 # in_ring=False,
             )
+            new_graph.nodes[node_id]["hcount"] -= 1
         return new_graph