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Quick Fix#29

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TieuLongPhan merged 6 commits into
mainfrom
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Jul 25, 2025
Merged

Quick Fix#29
TieuLongPhan merged 6 commits into
mainfrom
staging

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@TieuLongPhan
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Quick Fix hydrogen

TieuLongPhan and others added 6 commits July 18, 2025 12:37
* update refractor

* fix reactor

* fix lint

* prepare bechmark

* refractor MODReactor and SynReactor

* update crn

* refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor

* test 3 os

* test

* test

* fix workflow

* fix lint

* fix win

* fix win

* fix win again

* update smart

* add synreactor implicit hydrogen

* fix mcsmatcher

* refractor visualization

* fix conflict rdkit, upgrade to 2025.3.1

* fix lint

* move aam_validator to Chem submodule

* fix lint

* prepare benchmark matcher

* change backend rule to mod

* prepare doc

* add doc

* update fih

* update graph module doc

* update doc

* prepare release

* .

* fix doc

* clean doc

* fix docstring

* fix tutorial

* update fig

* update explicit_hydrogen for its

* prepare release

* build doc

* fix lint

* fix bug in explicit hydrogen for ITS

* fix build

* fix

* fix

* fix

* fix doc

* update nauty canon, rule filters, change benchmark

* prepare release

* fix bug in nauty alg

* update doc

* add features for expanding its

* add rule_matcher.py

* add testcase rule matcher

* add wildcard for smiles

* add partial engine

* update new features

* update document

* add data

* update Chem features

* format docstring and refractor Chem module

* add auto-test pypi

* create dependabot

* test run yml

* test

* test docker

* add docker

* add docker

* .

* add readme

* rename

* release docker

* remove redundant file
* update refractor

* fix reactor

* fix lint

* prepare bechmark

* refractor MODReactor and SynReactor

* update crn

* refractor cluster, change to matcher, fix code synreactor, now resnow comparable to modreactor

* test 3 os

* test

* test

* fix workflow

* fix lint

* fix win

* fix win

* fix win again

* update smart

* add synreactor implicit hydrogen

* fix mcsmatcher

* refractor visualization

* fix conflict rdkit, upgrade to 2025.3.1

* fix lint

* move aam_validator to Chem submodule

* fix lint

* prepare benchmark matcher

* change backend rule to mod

* prepare doc

* add doc

* update fih

* update graph module doc

* update doc

* prepare release

* .

* fix doc

* clean doc

* fix docstring

* fix tutorial

* update fig

* update explicit_hydrogen for its

* prepare release

* build doc

* fix lint

* fix bug in explicit hydrogen for ITS

* fix build

* fix

* fix

* fix

* fix doc

* update nauty canon, rule filters, change benchmark

* prepare release

* fix bug in nauty alg

* update doc

* add features for expanding its

* add rule_matcher.py

* add testcase rule matcher

* add wildcard for smiles

* add partial engine

* update new features

* update document

* add data

* update Chem features

* format docstring and refractor Chem module

* add auto-test pypi

* create dependabot

* test run yml

* test

* test docker

* add docker

* add docker

* .

* add readme

* rename

* release docker

* remove redundant file

* fix lint

* fix bug

* fix lint

* add partial its beta

* test publising conda

* test publising conda

* fix workflow

* fix workflow

* fix workflow

* fix workflow again

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* tes pre-release

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* fix meta.yaml

* publish beta

* publish beta

* debug

* debug

* debug

* debug

* debug

* debug

* debug

* debug

* prepare release
@TieuLongPhan TieuLongPhan merged commit dc1ecc0 into main Jul 25, 2025
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