Improvements to Python Tests#879

Merged

alancleary merged 29 commits intomainfrom

alancleary/python-test-improvements

Mar 30, 2026

Commits on Mar 23, 2026

Added conftest.py
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Broke up test_ingest_with_stats_v3 into focused tests
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Replace manual use_arrow loops with pytest.mark.parametrize
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Split monolithic test file into focused modules
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Add tests to cover gaps in testing of create_dataset() parameters
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Add tests to cover gaps in testing of ingest_samples() parameters
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Add tests to cover gaps in testing of ReadConfig parameters
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Add tests to cover gaps in testing of conttinue_read() and continue_read_arrow() parameters
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Add tests for delete_samples() edge cases and consolidate delete tests
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Add tests to cover gaps in testing of the static Dataset.delete() method
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Add test for Dataset constructor invalid mode
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Add tests for config_logging()
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Split Dataset-level tests into test_dataset.py and added version/schema_version tests
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Add tests for Dataset.sample_count()
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Add tests for Dataset.tiledb_stats()
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Add tests for Dataset.export()
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Add tests for deprecated TileDBVCFDataset class
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Fix DeprecationWarnings from deprecated region parameter in tests
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Test that delete_samples() raises when the dataset is open in read mode
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Test that total_memory_percentage is accepted by ingest_samples()
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Test read_iter() with samples_file and bed_file parameters
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Test sample_qc() samples and config parameters
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Test error paths for read_allele_frequency()
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Updated tests to ensure read/read_arrow/read_iter parameter parity
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Test attributes() invalid attr_type raises
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Test that set_af_filter and scan_all_samples parameters can be combined in read() and read_arrow()
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Commits on Mar 27, 2026

Add missing Python test docstrings and standardize their style across all tests
alancleary
committed
Removed extraneous comments from Python tests
alancleary
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Removed the TileDB TBB threads test
alancleary
committed

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Improvements to Python Tests#879

Improvements to Python Tests#879
alancleary merged 29 commits intomainfrom
alancleary/python-test-improvements

Commits on Mar 23, 2026

Added conftest.py

Broke up test_ingest_with_stats_v3 into focused tests

Replace manual use_arrow loops with pytest.mark.parametrize

Split monolithic test file into focused modules

Add tests to cover gaps in testing of create_dataset() parameters

Add tests to cover gaps in testing of ingest_samples() parameters

Add tests to cover gaps in testing of ReadConfig parameters

Add tests to cover gaps in testing of conttinue_read() and continue_read_arrow() parameters

Add tests for delete_samples() edge cases and consolidate delete tests

Add tests to cover gaps in testing of the static Dataset.delete() method

Add test for Dataset constructor invalid mode

Add tests for config_logging()

Split Dataset-level tests into test_dataset.py and added version/schema_version tests

Add tests for Dataset.sample_count()

Add tests for Dataset.tiledb_stats()

Add tests for Dataset.export()

Add tests for deprecated TileDBVCFDataset class

Fix DeprecationWarnings from deprecated region parameter in tests

Test that delete_samples() raises when the dataset is open in read mode

Test that total_memory_percentage is accepted by ingest_samples()

Test read_iter() with samples_file and bed_file parameters

Test sample_qc() samples and config parameters

Test error paths for read_allele_frequency()

Updated tests to ensure read/read_arrow/read_iter parameter parity

Test attributes() invalid attr_type raises

Test that set_af_filter and scan_all_samples parameters can be combined in read() and read_arrow()

Commits on Mar 27, 2026

Add missing Python test docstrings and standardize their style across all tests

Removed extraneous comments from Python tests

Removed the TileDB TBB threads test