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## Usage Guidelines
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TLDR: Search for `todo` and update all occurrences to your desired name
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Docker and singularity is not a must unless you cannot install some dependencies locally on HPC shell environment due to permission issue
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### Base Repo
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1. To run and test a built image, use [run_docker_container.sh](scripts/run_docker_container.sh) or `docker compose up -d`
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- The service by default will mount the whole repository onto `CODE_FOLDER` inside the container so any modification inside also takes effect outside, which is useful when you use vscode remote extension to develop inside a running container with docker context
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- The service by default will mount the whole repository onto `CODE_FOLDER` inside the container so any modification inside also takes effect outside, which is useful when you use vscode remote extension to develop inside a running container with remote docker context
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1.[push_docker_image.sh](scripts/push_docker_image.sh) to push the multi-arch image to docker hub
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1. Submit job by `sbatch jobs/your-cluster/your-job.job` or `jobs/your-cluster/your-job.job`
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1. Recommend [turm](https://github.com/kabouzeid/turm) for job monitor, use `turn -u your-slurm-user` after installation
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1. Recommend [turm](https://github.com/kabouzeid/turm) for job monitor, use `turm -u your-slurm-user` after installation
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