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Update README.md
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README.md

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@@ -23,11 +23,11 @@ Docker and singularity is not a must unless you cannot install some dependencies
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### Docker Config
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1. Modify `DOCKER_USER`, `IMAGE_NAME`, `IMAGE_USER` in [.env](.env)
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1. Modify `todo-docker-user`, `todo-image-name`, `todo-image-user` in [.env](.env)
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- [.env](env) will be loaded when you use docker compose for build/run/push/...
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- `DOCKER_USER` refers to your docker hub account username
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- `IMAGE_USER` refers to the default user inside the image, which is used to determine home folder
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- `todo-docker-user` refers to your docker hub account username
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- `todo-image-user` refers to the default user inside the image, which is used to determine home folder
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1. Modify the service name from `default` to your service name in [docker-compose.yml](docker-compose.yml), add additional volume mounting options such as dataset directories
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@@ -59,7 +59,7 @@ Docker and singularity is not a must unless you cannot install some dependencies
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1. [run_singularity_instance.sh](scripts/run_singularity_instance.sh) to test the image
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- Add additional volume binding options to the script such as dataset directories, best practice is to define in [.env](.env) then export in [variables.sh](scripts/variables.sh) with `resolve_host_path` to turn relative path into absolute real path
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- Singularity instances by default has less environment separation than docker containers unless you specify the additional options like the script
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- Singularity instances by default has less environment isolation than docker containers unless you specify the additional options like the script
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### Job Config
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