rattler-build #2321
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -30,19 +30,22 @@ jobs: | |
| python-version: [3.11] | ||
| numpy-version: [1.25] | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: {fetch-depth: 0, submodules: recursive} | ||
| - id: reqs | ||
| name: set requirements | ||
| run: | | ||
| envname="${GITHUB_REPOSITORY##*/}-${GITHUB_RUN_ID}.${GITHUB_RUN_NUMBER}" | ||
| echo "envname=$envname" >> $GITHUB_OUTPUT | ||
| sed -ri -e 's/^(name: ).*/\1$envname/' -e '/ python /d' -e 's/(.* numpy) .*/\1=${{ matrix.numpy-version }}/' scripts/cil_development.yml | ||
| - uses: conda-incubator/setup-miniconda@v4 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| use-mamba: true | ||
| mamba-version: "*" | ||
| channels: conda-forge | ||
| activate-environment: ${{ steps.reqs.outputs.envname }} | ||
| environment-file: scripts/cil_development.yml | ||
| run-post: false | ||
| - id: build | ||
| name: build | ||
|
|
@@ -60,35 +63,14 @@ jobs: | |
| sed -i '/${{ steps.reqs.outputs.envname }}/d' ~/.profile | ||
| source ~/.profile | ||
| conda env remove -n "${{ steps.reqs.outputs.envname }}" | ||
| test-matrix: | ||
| runs-on: ubuntu-slim | ||
| outputs: | ||
| python-version: ${{ steps.matrix.outputs.python-version }} | ||
| numpy-version: ${{ steps.matrix.outputs.numpy-version }} | ||
| os: ${{ steps.matrix.outputs.os }} | ||
| include: ${{ steps.matrix.outputs.include }} | ||
| conda-include: ${{ steps.matrix.outputs.conda-include }} | ||
| steps: | ||
| - id: matrix | ||
| run: | | ||
|
|
@@ -109,113 +91,99 @@ jobs: | |
| fi | ||
| fi | ||
| if $include_max; then | ||
| echo "include=[{'os': 'ubuntu', 'python-version': 3.12, 'numpy-version': 1.26}, {'os': 'windows', 'python-version': 3.12, 'numpy-version': 1.26}]" >> $GITHUB_OUTPUT | ||
| echo "conda-include=[{'os': 'ubuntu', 'python-version': 3.12}, {'os': 'windows', 'python-version': 3.12}]" >> $GITHUB_OUTPUT | ||
| else | ||
| echo "include=[]" >> $GITHUB_OUTPUT | ||
| fi | ||
| test: | ||
| defaults: {run: {shell: 'bash -el {0}'}} | ||
| runs-on: ${{ matrix.os }}-${{ matrix.os == 'ubuntu' && '24.04' || '2022' }} | ||
| needs: test-matrix | ||
| strategy: | ||
| matrix: | ||
| os: ${{ fromJson(needs.test-matrix.outputs.os) }} | ||
| python-version: ${{ fromJson(needs.test-matrix.outputs.python-version) }} | ||
| numpy-version: ${{ fromJson(needs.test-matrix.outputs.numpy-version) }} | ||
| include: ${{ fromJson(needs.test-matrix.outputs.include) }} | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: {fetch-depth: 0, submodules: recursive} | ||
| - name: set requirements | ||
| run: sed -ri -e 's/(.* python) .*/\1=${{ matrix.python-version }}/' -e 's/(.* numpy) .*/\1=${{ matrix.numpy-version }}/' -e 's/cuda*/py*/' -e '/tigre/d' scripts/cil_development.yml | ||
| - uses: conda-incubator/setup-miniconda@v4 | ||
| with: | ||
| miniforge-version: latest | ||
| use-mamba: true | ||
| mamba-version: "*" | ||
| channels: conda-forge | ||
| activate-environment: cil_dev | ||
| environment-file: scripts/cil_development.yml | ||
| - run: pip install . | ||
| - name: test | ||
| run: python -m unittest discover -v ./Wrappers/Python/test | ||
| conda-build-test: | ||
| runs-on: ${{ matrix.os }}-${{ matrix.os == 'ubuntu' && '24.04' || '2022' }} | ||
| needs: test-matrix | ||
| strategy: | ||
| matrix: | ||
| os: ${{ fromJson(needs.test-matrix.outputs.os) }} | ||
| python-version: ${{ fromJson(needs.test-matrix.outputs.python-version) }} | ||
| include: ${{ fromJson(needs.test-matrix.outputs.conda-include) }} | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: | ||
| fetch-depth: 0 | ||
| submodules: recursive | ||
| ref: ${{ github.event.pull_request.head.sha || github.ref }} # fix SHA | ||
| - if: matrix.os == 'windows' | ||
| uses: ilammy/msvc-dev-cmd@v1 | ||
| - uses: prefix-dev/rattler-build-action@v0.2.37 | ||
| with: | ||
| recipe-path: recipe.yaml | ||
| build-args: --experimental -c conda-forge -c https://software.repos.intel.com/python/conda -c ccpi --variant python=${{ matrix.python-version }} | ||
| artifact-name: conda-py${{ matrix.python-version }}-${{ matrix.os }} | ||
|
Member
There was a problem hiding this comment. Is there a reason why this is now named 'conda' - it used to be named 'cil'?
Member
Author
There was a problem hiding this comment.
Member
There was a problem hiding this comment. I think it would be better to be consistent with the previous naming: https://anaconda.org/channels/ccpi/packages/cil/files
Member
Author
There was a problem hiding this comment. The conda file names are unchanged. This is just the GitHub art[ie]fact zip name |
||
| conda-upload: | ||
| if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags') | ||
| defaults: {run: {working-directory: output}} | ||
| runs-on: ubuntu-slim | ||
| needs: conda-build-test | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| - uses: prefix-dev/rattler-build-action@v0.2.37 | ||
| with: {setup-only: true} | ||
| - uses: actions/download-artifact@v8 | ||
| with: {pattern: conda-py*-*, path: output, merge-multiple: true} | ||
| - name: conda upload -c ccpi | ||
| run: > | ||
| rattler-build upload anaconda */*.conda -f | ||
| -o ccpi -a ${{ secrets.CCPI_CONDA_TOKEN }} | ||
| -c ${{ startsWith(github.ref, 'refs/tags') && 'main' || 'dev' }} | ||
| - if: startsWith(github.ref, 'refs/tags') | ||
| name: conda upload -c tomography.stfc.ac.uk/conda | ||
| run: | | ||
| echo '${{ secrets.STFC_SSH_KEY }}' > ./key | ||
| chmod 600 ./key | ||
| rsync -e 'ssh -o StrictHostKeyChecking=no -i ./key' -R */*.conda '${{ secrets.STFC_SSH_HOST }}:${{ secrets.STFC_SSH_CONDA_DIR }}' | ||
| ssh -o StrictHostKeyChecking=no -i ./key ${{ secrets.STFC_SSH_HOST }} \ | ||
| 'bash -lic "conda index --bz2 --zst --run-exports --channeldata --rss -n ccpi ${{ secrets.STFC_SSH_CONDA_DIR }}"' | ||
| docs: | ||
| defaults: {run: {shell: 'bash -el {0}', working-directory: docs}} | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: | ||
| fetch-depth: 0 | ||
| submodules: recursive | ||
| ref: ${{ github.event.pull_request.head.sha || github.ref }} # fix SHA | ||
| - uses: conda-incubator/setup-miniconda@v4 | ||
| with: | ||
| miniforge-version: latest | ||
| use-mamba: true | ||
| python-version: 3.12 | ||
| mamba-version: "*" | ||
| channels: conda-forge | ||
| conda-remove-defaults: true | ||
| - uses: ruby/setup-ruby@v1 | ||
| with: | ||
| ruby-version: '3.2' | ||
|
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@@ -224,18 +192,18 @@ jobs: | |
| - name: install dependencies | ||
| run: | | ||
| mamba install -c conda-forge -yq conda-merge | ||
| sed -ri -e 's/(.* python) .*/\1=3.12/' -e 's/cuda*/py*/' -e '/tigre/d' ../scripts/cil_development.yml | ||
| conda-merge ../scripts/cil_development.yml docs_environment.yml > environment.yml | ||
| mamba env update -n test --file environment.yml | ||
| conda list | ||
| - run: pip install .. | ||
| - name: checkout docs | ||
| uses: actions/checkout@v6 | ||
| with: | ||
| path: docs/build | ||
| ref: gh-pages | ||
| - id: pages | ||
| uses: actions/configure-pages@v6 | ||
| - name: update web pages (jekyll) | ||
| run: make JEKYLLOPTS="--baseurl ${{ steps.pages.outputs.base_path }}" web-deps web | ||
| env: {JEKYLL_ENV: production} | ||
|
|
@@ -245,7 +213,7 @@ jobs: | |
| docs_dir="${docs_dir//\//_}" | ||
| if test "$docs_dir" = master; then docs_dir=nightly; fi | ||
| make BUILDSUBDIR="$docs_dir" dirhtml | ||
| - uses: actions/upload-artifact@v7 | ||
| with: | ||
| name: DocumentationHTML | ||
| path: docs/build | ||
|
|
@@ -263,7 +231,7 @@ jobs: | |
| contents: read | ||
| packages: write | ||
| steps: | ||
| - uses: actions/checkout@v6 | ||
| with: | ||
| fetch-depth: 0 | ||
| submodules: recursive | ||
|
|
@@ -272,8 +240,8 @@ jobs: | |
| with: | ||
| docker-images: false | ||
| large-packages: false | ||
| - uses: docker/setup-buildx-action@v4 | ||
| - uses: docker/metadata-action@v6 | ||
| id: meta | ||
| with: | ||
| images: ghcr.io/${{ github.repository }} | ||
|
|
@@ -283,13 +251,13 @@ jobs: | |
| type=semver,pattern={{major}}.{{minor}} | ||
| labels: | | ||
| org.opencontainers.image.licenses=Apache-2.0 AND BSD-3-Clause AND GPL-3.0 | ||
| - uses: docker/login-action@v4 | ||
| if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags') | ||
| with: | ||
| registry: ghcr.io | ||
| username: ${{ github.actor }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| - uses: docker/build-push-action@v7 | ||
| with: | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
|
|
@@ -300,7 +268,7 @@ jobs: | |
| run: > | ||
| docker run --rm -v .:/CIL tomographicimaging/cil:test /bin/bash -c | ||
| 'python -m unittest discover -v /CIL/Wrappers/Python/test' | ||
| - uses: docker/build-push-action@v7 | ||
| with: | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
|
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@@ -309,6 +277,6 @@ jobs: | |
| tags: ${{ steps.meta.outputs.tags }} | ||
| labels: ${{ steps.meta.outputs.labels }} | ||
| pass: | ||
| needs: [test-cuda, test, conda-build-test, docs, docker] | ||
| runs-on: ubuntu-slim | ||
| steps: [{run: echo success}] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| /build* | ||
| /output/ | ||
| __pycache__/ | ||
| /Wrappers/Python/cil-*.dist-info/ | ||
| /Wrappers/Python/cil/include/ | ||
|
|
||
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