chore: prepare repo for public GitHub publication

- Untrack CLAUDE.md (local AI operating manual, not for public view)
- Add CLAUDE.md and .claude/ to .gitignore
- Replace USER placeholder with Tools00 in repo URLs (pyproject,
  CONTRIBUTING, INSTALL, MODEL_CARD, CHANGELOG)
- Add short AI-assisted-development disclosure to README

Author: Tools00

.gitignore

@@ -50,3 +50,7 @@ data/processed/
 secrets/
 *.pem
 *.key
+
+# Local AI operating manual — not for public repo
+CLAUDE.md
+.claude/

CHANGELOG.md

@@ -92,5 +92,5 @@ Format: [Keep a Changelog](https://keepachangelog.com/en/1.1.0/) · SemVer.
 - Keine Multi-phase Flow
 - Nur 1 Validation-Datensatz (analytisch, noch nicht gegen Experiment)
 
-[Unreleased]: https://github.com/USER/pem-ec-designer/compare/v0.1.0...HEAD
-[0.1.0]: https://github.com/USER/pem-ec-designer/releases/tag/v0.1.0
+[Unreleased]: https://github.com/Tools00/pem-ec-designer/compare/v0.1.0...HEAD
+[0.1.0]: https://github.com/Tools00/pem-ec-designer/releases/tag/v0.1.0

CLAUDE.md

@@ -23,7 +23,7 @@ please read this before opening a PR.
 ## Dev setup
 
 ```bash
-git clone https://github.com/USER/pem-ec-designer.git
+git clone https://github.com/Tools00/pem-ec-designer.git
 cd pem-ec-designer
 python -m venv venv
 source venv/bin/activate

CONTRIBUTING.md

@@ -219,4 +219,13 @@ MIT — see [LICENSE](LICENSE).
 ## Author
 
 Abed Qadi — Simulation Engineer.
-Issues, questions, collaborations → [open an issue on GitHub](https://github.com/).
+Issues, questions, collaborations → [open an issue on GitHub](https://github.com/Tools00/pem-ec-designer/issues).
+
+---
+
+## Development note
+
+This project is developed with AI-assisted tooling (Claude Code).
+Physics, architecture, and scope decisions are human-reviewed; every
+equation carries a literature reference, and all results are validated
+against analytical checks and published data (see [MODEL_CARD.md](docs/MODEL_CARD.md)).

README.md

@@ -19,7 +19,7 @@ Detailed setup instructions for development and local use.
 
 ```bash
 # Clone
-git clone https://github.com/USER/pem-ec-designer.git
+git clone https://github.com/Tools00/pem-ec-designer.git
 cd pem-ec-designer
 
 # Virtual environment
@@ -46,7 +46,7 @@ pytest tests/ -v
 curl -LsSf https://astral.sh/uv/install.sh | sh
 
 # Clone
-git clone https://github.com/USER/pem-ec-designer.git
+git clone https://github.com/Tools00/pem-ec-designer.git
 cd pem-ec-designer
 
 # Create env and install from pyproject.toml

docs/INSTALL.md

@@ -167,7 +167,7 @@ byte-identical outputs.
   title   = {{PEM-EC Designer: Physics-Based Simulation of PEM Water Electrolysis}},
   version = {0.2.0},
   year    = {2026},
-  url     = {https://github.com/USER/pem-ec-designer}
+  url     = {https://github.com/Tools00/pem-ec-designer}
 }
 ```
 

docs/MODEL_CARD.md

@@ -45,10 +45,10 @@ dev = [
 ]
 
 [project.urls]
-Homepage = "https://github.com/USER/pem-ec-designer"
-Repository = "https://github.com/USER/pem-ec-designer"
-Issues = "https://github.com/USER/pem-ec-designer/issues"
-Changelog = "https://github.com/USER/pem-ec-designer/blob/main/CHANGELOG.md"
+Homepage = "https://github.com/Tools00/pem-ec-designer"
+Repository = "https://github.com/Tools00/pem-ec-designer"
+Issues = "https://github.com/Tools00/pem-ec-designer/issues"
+Changelog = "https://github.com/Tools00/pem-ec-designer/blob/main/CHANGELOG.md"
 
 [tool.setuptools.packages.find]
 where = ["."]