stagetool-ui

Test Data

The test data can be found here: https://github.com/Turku-BioImaging/stagetool-ui/tree/main/src/tests/images. This data is also found on the deployed homepage, under the TRY STAGETOOL section. To run the test images, simply click on them on the homepage.

Input

Whole-testis DAPI-stained cross-section image slices of size 1024 * 1024 px.

Output

• Resulting image: Detected tubule data overlaid over the input image
• Json file of the resulting detected tubule data

Deployment

cp .env.example .env and then modify the configuration.

docker build . -t stagetool-ui
docker compose up