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Merge pull request #258 from UC-Davis-molecular-computing/dev
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2 parents 13d4e0e + f198708 commit 4d0c152

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‎examples/output_designs/domain_colors.sc‎

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‎examples/output_designs/oxdna_export_with_pitch.sc‎

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‎examples/output_designs/oxdna_export_with_pitch.zip‎

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‎examples/output_designs/oxdna_export_with_pitch_0.sc‎

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‎examples/output_designs/oxdna_export_with_pitch_45.sc‎

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‎examples/oxdna/oxdna_export_with_pitch_0.dat‎

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‎examples/oxdna/oxdna_export_with_pitch_0.top‎

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‎examples/oxdna/oxdna_export_with_pitch_45.dat‎

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‎examples/oxdna/oxdna_export_with_pitch_45.top‎

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‎examples/oxdna_export_with_pitch.py‎

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import scadnano as sc
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def create_design(pitch: float) -> sc.Design:
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helices = [sc.Helix(max_offset=100) for _ in range(2)]
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design = sc.Design(helices=helices, grid=sc.square)
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design.groups[sc.default_group_name].pitch = pitch
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design.draw_strand(0, 0).to(21)
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design.draw_strand(1, 0).to(21)
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return design
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if __name__ == '__main__':
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for pitch in [0, 45]:
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d = create_design(pitch)
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d.write_scadnano_file(filename=f'oxdna_export_with_pitch_{pitch}.sc', directory='output_designs')
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d.write_oxdna_files(filename_no_extension=f'oxdna_export_with_pitch_{pitch}', directory='oxdna')

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