Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
352 commits
Select commit Hold shift + click to select a range
3db68ec
Try to reduce memory burden of logs, readded param grid, but shortene…
RachelMurray-Watson Jan 20, 2026
35319d6
Try to reduce memory burden of logs, readded param grid, but shortene…
RachelMurray-Watson Jan 20, 2026
34536a0
Fixed misplaced read-in of p(disruption)
RachelMurray-Watson Jan 20, 2026
174c8cf
Remove improved health seeking
RachelMurray-Watson Jan 20, 2026
f9a1443
Extra test of long run to 2040
RachelMurray-Watson Jan 20, 2026
15b397b
Test with demog_detail warning
RachelMurray-Watson Jan 20, 2026
f797ac3
Add in symptom_manager spurious symptoms
RachelMurray-Watson Jan 20, 2026
e521cb8
Fixed potential errors from merge with master
RachelMurray-Watson Jan 21, 2026
f22c703
Fixed potential errors from merge with master
RachelMurray-Watson Jan 21, 2026
738609b
Fixed potential errors from merge with master
RachelMurray-Watson Jan 21, 2026
462facc
Fixed potential errors from merge with master
RachelMurray-Watson Jan 21, 2026
d204b70
Fixed potential errors from merge with master
RachelMurray-Watson Jan 21, 2026
95f4451
Introduce master version of healthburden.py
RachelMurray-Watson Jan 21, 2026
021e637
Introduce master version of healthburden.py
RachelMurray-Watson Jan 21, 2026
0becaad
Bigger pop
RachelMurray-Watson Jan 21, 2026
af4c835
District but no monthly healthburden logging
RachelMurray-Watson Jan 21, 2026
37c4069
District but no monthly healthburden logging
RachelMurray-Watson Jan 21, 2026
086a203
Introduce check to ensure that the boolean is being evaluated as such
RachelMurray-Watson Jan 22, 2026
7542d10
Include a dalys by district by month log
RachelMurray-Watson Jan 22, 2026
dde8648
Explicit to see which modules were overwriting the district_of_residence
RachelMurray-Watson Jan 22, 2026
9240e6b
Increase to 2041
RachelMurray-Watson Jan 22, 2026
44bab21
typo
RachelMurray-Watson Jan 22, 2026
fd0af90
Generate file for LHS so can take new batches of parameters
RachelMurray-Watson Jan 22, 2026
7903ac6
PARAM FILE FOR SUSPEND-RESUME burn-in period
RachelMurray-Watson Jan 22, 2026
54b965b
PARAM FILE FOR SUSPEND-RESUME burn-in period
RachelMurray-Watson Jan 22, 2026
bf5ba39
PARAM FILE FOR SUSPEND-RESUME burn-in period
RachelMurray-Watson Jan 22, 2026
2949eea
Corrected file path
RachelMurray-Watson Jan 22, 2026
ce6a6a8
Adjusted scenario file for all runs
RachelMurray-Watson Jan 24, 2026
d570059
Adjusted scenario file for all runs
RachelMurray-Watson Jan 24, 2026
123b250
Typo
RachelMurray-Watson Jan 25, 2026
ec86aea
Typo
RachelMurray-Watson Jan 26, 2026
e4dde82
Updated baseline parameters for baseline/best/worst scenario
RachelMurray-Watson Jan 26, 2026
e9d8b71
Script for calculating prcc
RachelMurray-Watson Jan 26, 2026
38f75f5
Script for looking at HSIs over time
RachelMurray-Watson Jan 28, 2026
8d9909d
Unips log files and skips over what has already been unzipped
RachelMurray-Watson Feb 2, 2026
e729a3e
Added extra logging
RachelMurray-Watson Feb 2, 2026
2783713
Fix up graphs (e.g. remove do scaling)
RachelMurray-Watson Feb 2, 2026
4c22e5c
Typo
RachelMurray-Watson Feb 2, 2026
9e40e2e
Typo
RachelMurray-Watson Feb 2, 2026
22f7213
Typo
RachelMurray-Watson Feb 2, 2026
eb5d9ed
Typo
RachelMurray-Watson Feb 2, 2026
a276b2f
Typo
RachelMurray-Watson Feb 2, 2026
8145415
More runs
RachelMurray-Watson Feb 2, 2026
3bf7acf
Made parameter reading more robust
RachelMurray-Watson Feb 3, 2026
3effee4
Reading in parameters needed to be more robust
RachelMurray-Watson Feb 3, 2026
6c33865
Reading in parameters needed to be more robust
RachelMurray-Watson Feb 3, 2026
f27b195
Graphing
RachelMurray-Watson Feb 3, 2026
6eed8af
Simplified
RachelMurray-Watson Feb 3, 2026
d7aae24
Graphs
RachelMurray-Watson Feb 3, 2026
1f0e9c3
Changed so can weather disruptions can happen in any year
RachelMurray-Watson Feb 3, 2026
fa3afa1
Parameter file to see why the levels are all consistently lower than …
RachelMurray-Watson Feb 3, 2026
7430db6
Graphs
RachelMurray-Watson Feb 3, 2026
fd24119
Parameter file to see why the levels are all consistently lower than …
RachelMurray-Watson Feb 3, 2026
9f4994a
Added new graphing
RachelMurray-Watson Feb 4, 2026
5dcf9ed
Monthly logging of HSIs by facility
RachelMurray-Watson Feb 4, 2026
59021be
Monthly logging of HSIs by facility, typo
RachelMurray-Watson Feb 5, 2026
a0c4c6e
Monthly logging of HSIs by facility, typo
RachelMurray-Watson Feb 5, 2026
2f5f20f
Monthly logging of HSIs by facility, typo
RachelMurray-Watson Feb 5, 2026
bd68814
Tidied
RachelMurray-Watson Feb 5, 2026
9c17c05
Debug
RachelMurray-Watson Feb 5, 2026
52f596a
Error - make sure it is always initialised (circumvent issue??)
RachelMurray-Watson Feb 5, 2026
412f5e3
More debug statements
RachelMurray-Watson Feb 5, 2026
0e07cca
REMOVED DEBUG. Issue was the suspend/resume - could not add to the lo…
RachelMurray-Watson Feb 5, 2026
3e08b7f
REMOVED DEBUG. Issue was the suspend/resume - could not add to the lo…
RachelMurray-Watson Feb 5, 2026
a7fda5c
Changed directory
RachelMurray-Watson Feb 6, 2026
a0949a7
Graphing results
RachelMurray-Watson Feb 10, 2026
4d9d418
Graphing results
RachelMurray-Watson Feb 10, 2026
b8e45a6
Add in new calculation of distrubance by facility
RachelMurray-Watson Feb 10, 2026
9b6a549
Tried graphing with only facilities that experienced disruption
RachelMurray-Watson Feb 11, 2026
1a6645f
Look at new LM
RachelMurray-Watson Feb 11, 2026
72c62d2
Tried to include more facilities, but then changed relationship - so …
RachelMurray-Watson Feb 12, 2026
3660b6e
Improve graphing - include proportions etc., also unpickle only files…
RachelMurray-Watson Feb 13, 2026
a5fdec3
DALYs by region aggregated across all years. Shows no significant impact
RachelMurray-Watson Feb 13, 2026
7369001
Across all, runs, breakdown of DALYs by cause of ill-health
RachelMurray-Watson Feb 13, 2026
c39c382
Merge branch 'refs/heads/master' into rmw/climate_troubleshoot_LHS
RachelMurray-Watson Feb 13, 2026
9c4d8d5
Summary over 200 draws
RachelMurray-Watson Feb 13, 2026
1d3c356
Given how large the files are, inlcuded an option to unpickle files o…
RachelMurray-Watson Feb 16, 2026
8176bfb
Given how large the files are, inlcuded an option to unpickle files o…
RachelMurray-Watson Feb 16, 2026
2979064
In the 200 parameter draws, due to issues with the clinics module, ne…
RachelMurray-Watson Feb 16, 2026
4c0bb99
Rename
RachelMurray-Watson Feb 16, 2026
462c3a1
Analysis for PRCC of outcomes
RachelMurray-Watson Feb 17, 2026
1842b62
Analysis of range etc of disrupted HSIs
RachelMurray-Watson Feb 17, 2026
9f5e013
Typo in merging from master
RachelMurray-Watson Feb 18, 2026
4487601
Git
RachelMurray-Watson Feb 18, 2026
415dd78
Changed to ENSURE a unique co-ord for everyone and also the mapping w…
RachelMurray-Watson Feb 18, 2026
8334407
Removed error in merging master (duplication)
RachelMurray-Watson Feb 18, 2026
10e111e
Testing graphing
RachelMurray-Watson Feb 18, 2026
19d539c
Merge branch 'refs/heads/master' into rmw/climate_troubleshoot_LHS
RachelMurray-Watson Feb 18, 2026
f5f1b1d
Restored csv file
RachelMurray-Watson Feb 18, 2026
1dbd6d5
Restored csv file
RachelMurray-Watson Feb 18, 2026
a3b83a6
Restored csv file
RachelMurray-Watson Feb 18, 2026
9796a3e
Added logging the realfacility ID
RachelMurray-Watson Feb 18, 2026
cca00f7
Plotting
RachelMurray-Watson Feb 19, 2026
110c571
Saving number at each facility in logger, removed plot
RachelMurray-Watson Feb 19, 2026
8e7059f
Error - files were empty
RachelMurray-Watson Feb 19, 2026
1e123ac
Removed plotting
RachelMurray-Watson Feb 19, 2026
6be3749
Try and do matching
RachelMurray-Watson Feb 19, 2026
dcdc238
draw for suspending
RachelMurray-Watson Feb 19, 2026
944917d
draw for suspending
RachelMurray-Watson Feb 19, 2026
396cc01
draw for suspending
RachelMurray-Watson Feb 19, 2026
0243978
Fix graphing
RachelMurray-Watson Feb 20, 2026
7758877
Fix graphing
RachelMurray-Watson Feb 20, 2026
166fc9a
Making sure all of the facility info and disruption calculations are …
RachelMurray-Watson Feb 20, 2026
6d48a60
"resumed" runs with RealFacID
RachelMurray-Watson Feb 20, 2026
e94b959
Only include possible facilities in model that have estimated disrupt…
RachelMurray-Watson Feb 23, 2026
549be9d
Edits as had duplicated date columns in healthsystem which precluded …
RachelMurray-Watson Feb 23, 2026
09fe03b
Removed date column from totalhsi logs
RachelMurray-Watson Feb 23, 2026
d21d165
Added in realfacility ID denominator
RachelMurray-Watson Feb 23, 2026
78982b1
Added in realfacility ID denominator
RachelMurray-Watson Feb 23, 2026
a74c14a
Fixed the function to ensure the counts happen
RachelMurray-Watson Feb 24, 2026
fe884b0
Fixed with current logs etc. for HSIs
RachelMurray-Watson Feb 24, 2026
412a402
Fixed up deaths_dalys map for clarity, and for Grantham Showcase
RachelMurray-Watson Feb 25, 2026
ca68c29
Calculates monthly projected precipitation for each facility in the f…
RachelMurray-Watson Feb 25, 2026
78f30e8
Gets the expanded facility info (i.e. X covariates) for all facilitie…
RachelMurray-Watson Feb 25, 2026
b3d139a
Now points to the all facilities file, not to be restricted by only t…
RachelMurray-Watson Feb 25, 2026
37ed09d
Returned to get lowest/median/highest of all files for comparison
RachelMurray-Watson Feb 25, 2026
2996c31
Optimised extraction of high/low/medium (Claud help)
RachelMurray-Watson Feb 25, 2026
e2c2cdb
Merge branch 'refs/heads/master' into rmw/climate_troubleshoot_LHS
RachelMurray-Watson Feb 26, 2026
e382834
Ensures it includes 2024 in files to calculate the lags
RachelMurray-Watson Feb 26, 2026
c072d8d
Intoduced pseudo-random sampling to ensure that the generation of lat…
RachelMurray-Watson Feb 26, 2026
72e9ef1
Reverted to master
RachelMurray-Watson Feb 26, 2026
0cb4424
Based on https://github.com/UCL/TLOmodel/blob/rmw/climate_change_heal…
RachelMurray-Watson Feb 27, 2026
c0dc485
Notebook used in ANC paper to get monthly- and 5-day window data for …
RachelMurray-Watson Feb 27, 2026
7c14450
Edits for new pandas
RachelMurray-Watson Feb 27, 2026
5ab3218
Works with data generated by /Users/rem76/PycharmProjects/TLOmodel/sr…
RachelMurray-Watson Feb 27, 2026
97fe0f9
Works with data generated by /Users/rem76/PycharmProjects/TLOmodel/sr…
RachelMurray-Watson Feb 27, 2026
d1850fa
json
RachelMurray-Watson Feb 27, 2026
e01391c
git?
RachelMurray-Watson Feb 27, 2026
68fd5c4
Ensures
RachelMurray-Watson Feb 27, 2026
9cb7665
Plotting
RachelMurray-Watson Feb 27, 2026
36d1488
Changed year, for baseline pre-suspend runs
RachelMurray-Watson Feb 27, 2026
10692b7
REsumed part of runs
RachelMurray-Watson Mar 2, 2026
f40f767
Updated with correct estimates of precipitation for ALL facilities (n…
RachelMurray-Watson Mar 2, 2026
908bc95
Updated with correct estimates of precipitation for ALL facilities (n…
RachelMurray-Watson Mar 2, 2026
6e6e5fb
ALSO added "delay" days, so that time-sensitive modules dont have inc…
RachelMurray-Watson Mar 2, 2026
f9a2219
Fix climate delay logic: subtract time waited, add window width, cap …
RachelMurray-Watson Mar 3, 2026
6112286
Latest runs
RachelMurray-Watson Mar 3, 2026
4f5a105
ensured logging of hsis was at monthjly level
RachelMurray-Watson Mar 5, 2026
2f077c8
For param scan
RachelMurray-Watson Mar 5, 2026
ad4683d
REverted to original logging to ensure consistency between
RachelMurray-Watson Mar 5, 2026
96a0201
REverted to original logging to ensure consistency between
RachelMurray-Watson Mar 5, 2026
028c2f7
git
RachelMurray-Watson Mar 5, 2026
0fa42c6
Updated for new runs with RealFacility ID
RachelMurray-Watson Mar 10, 2026
59d2507
PARAM SCANS INDEX 0 AND ENDS 50
RachelMurray-Watson Mar 10, 2026
2bc2d58
Plot showing how individuals/facilities are placed in TLO
RachelMurray-Watson Mar 11, 2026
f32ffa3
Added in graph showing DALYs over time and a dot plot of DALYs by dis…
RachelMurray-Watson Mar 11, 2026
89cf310
Made simpler, brought back to original script. HSIs by treatment ID, …
RachelMurray-Watson Mar 12, 2026
569619e
Added in CI, renamed scenarios
RachelMurray-Watson Mar 12, 2026
7e5564b
Added significance
RachelMurray-Watson Mar 12, 2026
1a1987f
Relabelled for clarity
RachelMurray-Watson Mar 13, 2026
4cd2a77
Removed calculated of expected disruption, use resource file directly
RachelMurray-Watson Mar 13, 2026
e56d00c
Added script that shows breakdown of DALYs by area of health, includi…
RachelMurray-Watson Mar 13, 2026
383f3fa
delete figures
RachelMurray-Watson Mar 13, 2026
4bd7779
Added in finer HSI ID plot (15 most weather disrupted)
RachelMurray-Watson Mar 13, 2026
d1c2ebc
Changed font size
RachelMurray-Watson Mar 13, 2026
f3dcfe6
isort
RachelMurray-Watson Mar 13, 2026
a282a3a
fix: compute per-run disruption rates before averaging across runs
RachelMurray-Watson Mar 17, 2026
6f493f8
Second batch: index starts at 50
RachelMurray-Watson Mar 17, 2026
191ab73
Second batch: index starts at 100
RachelMurray-Watson Mar 21, 2026
0b6ca19
Renamed
RachelMurray-Watson Mar 23, 2026
9194148
Tidied up
RachelMurray-Watson Mar 24, 2026
c55077d
New colours to show different in DALYS
RachelMurray-Watson Mar 24, 2026
59b3b23
Added in most-disrupted HSIs by disruption rates
RachelMurray-Watson Mar 24, 2026
64faab5
Add in plot for most CANCELLED
RachelMurray-Watson Mar 24, 2026
fbeca09
Fixed typo that averaged over two years
RachelMurray-Watson Mar 24, 2026
e6739c4
git
RachelMurray-Watson Mar 24, 2026
fdbd060
git
RachelMurray-Watson Mar 24, 2026
ec8f4da
ensure worst case has halved p(reseeking)
RachelMurray-Watson Mar 24, 2026
9db50f7
ensure worst case has halved p(reseeking)
RachelMurray-Watson Mar 24, 2026
7b4f7cb
test mode 2
RachelMurray-Watson Mar 24, 2026
b7c3bf3
test mode 2
RachelMurray-Watson Mar 24, 2026
a08b28e
test mode 2
RachelMurray-Watson Mar 24, 2026
8e1f68d
typo
RachelMurray-Watson Mar 24, 2026
e74bc3b
git
RachelMurray-Watson Mar 25, 2026
fb157a0
Added in "is_supply_side" check for Mode 2, so accounting done in pro…
RachelMurray-Watson Mar 25, 2026
62072cc
Test of dummy Mode 2 runs to ensure that mechanics and logging are co…
RachelMurray-Watson Mar 25, 2026
64c3a83
Test of dummy Mode 2 runs to ensure that mechanics and logging are co…
RachelMurray-Watson Mar 25, 2026
99ee284
Test of dummy Mode 2 runs to ensure that mechanics and logging are co…
RachelMurray-Watson Mar 25, 2026
39a7290
Added in test of capacity
RachelMurray-Watson Mar 26, 2026
d6ca566
clean
RachelMurray-Watson Mar 26, 2026
7623244
check dtypes failing
RachelMurray-Watson Mar 26, 2026
d33b6e6
Final batch
RachelMurray-Watson Mar 27, 2026
c7015af
BASELINE RUNS FOR MODE 2
RachelMurray-Watson Mar 27, 2026
47b1161
BASELINE RUNS FOR MODE 2
RachelMurray-Watson Mar 27, 2026
9de5677
BASELINE RUNS FOR MODE 2 incl scaling to effective capabilities
RachelMurray-Watson Mar 27, 2026
ccf46fa
BASELINE RUNS FOR MODE 2 incl scaling to effective capabilities
RachelMurray-Watson Mar 27, 2026
3ebcceb
Fix typo in worst case parameters
RachelMurray-Watson Mar 31, 2026
48086c8
Fix typo in worst case parameters
RachelMurray-Watson Mar 31, 2026
817ffb0
Added in summary statistics
RachelMurray-Watson Mar 31, 2026
e03fcb1
Now mode 2
RachelMurray-Watson Mar 31, 2026
3e03609
Fixed scale factor (order of 10 off)
RachelMurray-Watson Apr 1, 2026
86cad59
for comparison of ssps
RachelMurray-Watson Apr 1, 2026
0e3f472
for comparison of ssps
RachelMurray-Watson Apr 1, 2026
9101e92
looked at wet season too
RachelMurray-Watson Apr 1, 2026
225e625
add in other ssps
RachelMurray-Watson Apr 1, 2026
282bacd
add in other ssps
RachelMurray-Watson Apr 1, 2026
4c531d2
typo
RachelMurray-Watson Apr 1, 2026
8d59489
Added other ssps so they would have all of the facilities
RachelMurray-Watson Apr 1, 2026
e1ab402
Updated to be Mode 2, and to have the lowest/highest of each ssp in t…
RachelMurray-Watson Apr 1, 2026
d66aa24
Updated to be Mode 2, and to have the lowest/highest of each ssp in t…
RachelMurray-Watson Apr 1, 2026
b410645
correct typo
RachelMurray-Watson Apr 1, 2026
4a06b31
Climate disruption scenaios - corrected
RachelMurray-Watson Apr 1, 2026
6b49364
Climate disruption scenaios - corrected
RachelMurray-Watson Apr 1, 2026
afac263
Added suffix for mode_2
RachelMurray-Watson Apr 9, 2026
57e92f5
Combine two graphs
RachelMurray-Watson Apr 10, 2026
0d66aa2
Script showing the proportion of individuals who experience weather-d…
RachelMurray-Watson Apr 14, 2026
0021fa9
Updated colours, improved plotting such that the bar chart and region…
RachelMurray-Watson Apr 14, 2026
3237ce6
Fixed colours and labels
RachelMurray-Watson Apr 14, 2026
4c071e2
Graphing parameters
RachelMurray-Watson Apr 16, 2026
59a3df4
changed year for analysis/tags for analysis
RachelMurray-Watson Apr 20, 2026
5672498
Edit to allow for consistency in figures
RachelMurray-Watson Apr 21, 2026
4938ed9
Edit to allow for consistency in figures
RachelMurray-Watson Apr 21, 2026
eacafef
New file for calculating data needed PRCC only for parameter scan, pr…
RachelMurray-Watson Apr 23, 2026
aafd1e9
Graphing
RachelMurray-Watson Apr 23, 2026
b9da9bc
Graphing
RachelMurray-Watson May 12, 2026
c9d419b
Takes the total number of HSIs and finds the ratio between mode 1 and…
RachelMurray-Watson May 14, 2026
efc336a
deleted excess
RachelMurray-Watson May 15, 2026
5ee7d9a
Added precip data to see highest precip months
RachelMurray-Watson May 15, 2026
4657006
now added filter for wet-season months
RachelMurray-Watson May 15, 2026
4dcc3a3
now added filter for wet-season months
RachelMurray-Watson May 15, 2026
4f3b00b
Mode 1 analysis for climate
RachelMurray-Watson May 19, 2026
44025b6
Mode 1 analysis for climate
RachelMurray-Watson May 19, 2026
2c65265
Toggle mode 1/2
RachelMurray-Watson May 19, 2026
550a1c1
Added in scatterplots
RachelMurray-Watson May 19, 2026
f795138
unnecessayr
RachelMurray-Watson May 19, 2026
8f61dbd
Extra runs on climate baseline scenarios
RachelMurray-Watson May 19, 2026
ceaa2b9
Excised the hsi disruptions by ID and now in hsi_by_ID
RachelMurray-Watson May 20, 2026
5974d38
Added in YLL by monthly district
RachelMurray-Watson May 21, 2026
3ec5789
Reformatted for clarity
RachelMurray-Watson May 21, 2026
019f7c6
New plot combining drop in HSIs and HSIs by ID
RachelMurray-Watson May 21, 2026
e0de14c
reverted to allow extra runs
RachelMurray-Watson May 21, 2026
f14b4d6
Removed nans (unlogged facilities?) to avoid over-inflation of denomi…
RachelMurray-Watson May 21, 2026
cda1b19
Switched order and made the overall disription bar chart a relative d…
RachelMurray-Watson May 22, 2026
4b15407
Tidied to restrcure figure
RachelMurray-Watson May 26, 2026
a211fdb
fixed extraction params
RachelMurray-Watson May 26, 2026
2368418
Changed formatting of plot
RachelMurray-Watson May 26, 2026
8a24294
Different seed
RachelMurray-Watson May 26, 2026
54557a1
Fixed wet season PRCC to allow for correct wet season file
RachelMurray-Watson May 26, 2026
61ed69f
Clarify topen/close
RachelMurray-Watson May 28, 2026
7d95332
Tidied
RachelMurray-Watson May 28, 2026
cf36a27
Restructured figure layout to add stacked bar and % difference panels…
RachelMurray-Watson May 28, 2026
13dbad5
Added caching mechanism and refactored extraction functions for clari…
RachelMurray-Watson May 29, 2026
6ac01da
Refactored disruption concentration calculations, adjusted quantile t…
RachelMurray-Watson May 29, 2026
a7d79f6
Updated execution metadata and fixed undefined variable error in clim…
RachelMurray-Watson May 29, 2026
c0ce2ef
Revised PRCC bar sorting to use parameter-defined order for improved …
RachelMurray-Watson Jun 8, 2026
4c0a27a
Removed top-row stacked bar chart and related logic; updated figure l…
RachelMurray-Watson Jun 8, 2026
7d764a4
Added HSI deficit calculation and visualization; adjusted y-axis scal…
RachelMurray-Watson Jun 8, 2026
5e74b1b
Added HSI deficit export functionality (monthly and peak summary), up…
RachelMurray-Watson Jun 10, 2026
babb8c1
Expanded district-level visualization to 3x2 layout, added HSI defici…
RachelMurray-Watson Jun 11, 2026
cc8ac81
Enhanced PRCC bar chart visualization: added value annotations with d…
RachelMurray-Watson Jun 29, 2026
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5,002 changes: 5,002 additions & 0 deletions lhs_parameter_draws.json

Large diffs are not rendered by default.

2 changes: 2 additions & 0 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -61,6 +61,8 @@ dev = [
"pyinstrument>=4.3",
# Building requirements files
"pip-tools",
"shapely",
"geopandas"
]

[project.scripts]
Expand Down
11 changes: 11 additions & 0 deletions requirements/base.txt
Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,10 @@ et-xmlfile==1.1.0
# via openpyxl
fonttools==4.42.1
# via matplotlib
geopandas==1.0.1
# via tlo (pyproject.toml)
fsspec==2025.10.0
# via torch
gitdb==4.0.10
# via gitpython
gitpython==3.1.36
Expand Down Expand Up @@ -102,6 +106,9 @@ openpyxl==3.1.0
# via tlo (pyproject.toml)
packaging==23.1
# via matplotlib
# via
#matplotlib
# plotly
pandas==2.0.3
# via tlo (pyproject.toml)
pillow==10.0.1
Expand Down Expand Up @@ -137,6 +144,10 @@ requests-oauthlib==1.3.1
# via msrest
scipy==1.10.1
# via tlo (pyproject.toml)
shapely==2.1.0
# via
# geopandas
# tlo (pyproject.toml)
six==1.16.0
# via
# azure-core
Expand Down
50 changes: 50 additions & 0 deletions requirements/dev.txt
Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,8 @@ cachetools==5.3.1
certifi==2023.7.22
# via
# msrest
# pyogrio
# pyproj
# requests
cffi==1.15.1
# via cryptography
Expand Down Expand Up @@ -88,6 +90,16 @@ filelock==3.12.4
# virtualenv
fonttools==4.42.1
# via matplotlib
# via matplotlib
geopandas==1.0.1
# via tlo (pyproject.toml)
# via
# -c requirements/base.txt
# matplotlib
fsspec==2025.10.0
# via
# -c requirements/base.txt
# torch
gitdb==4.0.10
# via gitpython
gitpython==3.1.36
Expand Down Expand Up @@ -126,9 +138,19 @@ msrestazure==0.6.4
numpy==1.24.4
# via
# contourpy
# geopandas
# copulas
# ctgan
# deepecho
# matplotlib
# pandas
# pyogrio
# rdt
# scikit-learn
# scipy
# shapely
# sdmetrics
# sdv
# tlo (pyproject.toml)
oauthlib==3.2.2
# via requests-oauthlib
Expand All @@ -137,7 +159,10 @@ openpyxl==3.1.0
packaging==23.1
# via
# build
# geopandas
# matplotlib
# pyogrio
# plotly
# pyproject-api
# pytest
# tox
Expand Down Expand Up @@ -170,8 +195,16 @@ pyjwt[crypto]==2.8.0
# msal
pylint==3.0.1
# via tlo (pyproject.toml)
pyogrio==0.10.0
# via geopandas
pyparsing==3.1.1
# via matplotlib
# via matplotlib
pyproj==3.7.1
# via geopandas
# via
# -c requirements/base.txt
# matplotlib
pyproject-api==1.6.1
# via tox
pyproject-hooks==1.0.0
Expand Down Expand Up @@ -210,6 +243,23 @@ ruff==0.12.11
# via tlo (pyproject.toml)
scipy==1.10.1
# via tlo (pyproject.toml)
# via tlo (pyproject.toml)
shapely==2.1.0
# via
# geopandas
# tlo (pyproject.toml)
# via
# -c requirements/base.txt
# copulas
# rdt
# scikit-learn
# sdmetrics
# tlo (pyproject.toml)
sdmetrics==0.24.0
# via
# -c requirements/base.txt
# sdv

six==1.16.0
# via
# azure-core
Expand Down

Large diffs are not rendered by default.

Loading