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23 changes: 21 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -30,11 +30,27 @@ RUN mkdir /download && \
tar xzf apache-tomcat-*tar.gz && \
mv apache-tomcat-9.0.112 /usr/local/tomcat/ && \
cd / && \
rm -rf /download && \
rm -rf /usr/local/tomcat/webapps/* && \
mkdir /usr/local/tomcat/webapps/ROOT && \
printf "<%% response.sendRedirect(\"/cwms-data/\"); %%>\n" > /usr/local/tomcat/webapps/ROOT/index.jsp && \
printf "User-agent: *\nAllow: /cwms-data/\nDisallow: /cwms-data/auth/\nDisallow: /cwms-data/catalog/\nDisallow: /cwms-data/timeseries/\nDisallow: /cwms-data/swagger-docs\nDisallow: /auth/\nSitemap: https://cwms-data.usace.army.mil/sitemap.xml\n" > /usr/local/tomcat/webapps/ROOT/robots.txt
printf "User-agent: *\nAllow: /cwms-data/\nDisallow: /cwms-data/auth/\nDisallow: /cwms-data/catalog/\nDisallow: /cwms-data/timeseries/\nDisallow: /cwms-data/swagger-docs\nDisallow: /auth/\nSitemap: https://cwms-data.usace.army.mil/sitemap.xml\n" > /usr/local/tomcat/webapps/ROOT/robots.txt && \
mkdir -p /usr/local/tomcat/conf/Catalina/localhost
# Now replace the Tomcat logging with logback
# NOTE: I have reviewed this jar in jd-gui and do not see anything malicious, packages are isolated to avoid issues
# with other code.
# Additionally, when we are not also accounting for some legacy systems, we will likely shift to
# Jetty, or Embedded Tomcat, to simplify the deployment process, making this subtitution unnecessary.
RUN cd /download && \
wget https://repo1.maven.org/maven2/com/github/tomcat-slf4j-logback/tomcat9-slf4j-logback/9.0.115/tomcat9-slf4j-logback-9.0.115.jar && \
echo "cb463fb246fbb326d91b04a7280474f2b722b11cc9d3d7f6c3dbbefcff2c07e055f479d436ab785668d6fa90d0bfd325c86c4fa3a9ad9521159a2a3114916d91 *tomcat9-slf4j-logback-9.0.115.jar" > checksum.logback.txt && \
sha512sum -c checksum.logback.txt
RUN cd /download && \
cp tomcat9-slf4j-logback-9.0.115.jar /usr/local/tomcat/bin/tomcat-juli.jar && \
rm /usr/local/tomcat/conf/logging.properties && \
rm -rf /download



CMD ["/usr/local/tomcat/bin/catalina.sh","run"]

FROM tomcat_base AS api
Expand All @@ -45,6 +61,9 @@ COPY --from=builder /builddir/cwms-data-api/build/docker/context.xml /usr/local/
COPY --from=builder /builddir/cwms-data-api/build/docker/server.xml /usr/local/tomcat/conf
COPY --from=builder /builddir/cwms-data-api/build/docker/setenv.sh /usr/local/tomcat/bin
COPY --from=builder /builddir/cwms-data-api/build/docker/libs/ /usr/local/tomcat/lib
COPY --from=builder /builddir/cwms-data-api/build/docker/logback.xml /logback.xml
COPY --from=builder /builddir/cwms-data-api/build/docker/logback-juli.xml /logback-juli.xml
COPY --from=builder /builddir/cwms-data-api/build/docker/app-context.xml /usr/local/tomcat/conf/Catalina/localhost/cwms-data.xml

ENV CDA_JDBC_DRIVER="oracle.jdbc.driver.OracleDriver"
ENV CDA_JDBC_URL=""
Expand Down
16 changes: 15 additions & 1 deletion cda-gui/package-lock.json
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out of curiosity, why did this get modified for this PR?

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25 changes: 18 additions & 7 deletions cwms-data-api/build.gradle
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@ configurations.all {
exclude group: 'org.apache.xmlbeans'
exclude group: 'org.apache.poi'
exclude group: 'org.bouncycastle'
exclude group: 'org.apache.tomcat', module: 'tomcat-juli'
}

dependencies {
Expand All @@ -37,7 +38,7 @@ dependencies {
implementation(libs.jaxb.api)
implementation(libs.jaxb.core)
implementation(libs.jaxb.impl)
implementation(libs.cwms.db.jooq.codegen) {
implementation(libs.cwms.db.jooq.codegen) {
exclude group: "com.oracle", module: "*"
exclude group: "com.oracle.database.jdbc", module: "*"
exclude group: "org.jooq.pro", module: "*"
Expand All @@ -64,7 +65,7 @@ dependencies {
}
implementation(files("$buildDir/libs/${project.name}-${project.version}-codegen-shadow.jar"))

implementation(libs.slf4j)
compileOnly(libs.slf4j)

implementation(libs.monolith) {
//exclude group: "org.python", module: "jython-standalone"
Expand All @@ -75,14 +76,15 @@ dependencies {
implementation(libs.google.flogger.api)
implementation(libs.google.findbugs)
implementation(libs.google.errorProne)
runtimeOnly(libs.google.flogger.backend)
implementation(project(":flogger-cda-context"))
runtimeOnly(libs.google.flogger.system.backend)

implementation(libs.nucleus.data) {
exclude group: "org.jdom"
}
implementation(libs.nucleus.metadata)
implementation(libs.cwms.ratings.core) {

//exclude group: "mil.army.usace.hec.swingx"
exclude group: "*"
}
Expand Down Expand Up @@ -153,17 +155,23 @@ dependencies {

tomcatLibs(libs.bundles.tomcat.embedded)
tomcatLibs(libs.bundles.tomcat.support)

implementation(libs.slf4j)
testImplementation(libs.slf4j.jul)
tomcatLibs(libs.google.flogger.api)
tomcatLibs(libs.google.flogger.backend)
tomcatLibs(libs.google.flogger.system.backend)
baseLibs(libs.google.flogger.slf4j.backend) {
exclude group: "org.slf4j"
}

baseLibs(libs.ch.qos.logback)

testImplementation(libs.bundles.testcontainers)

testImplementation(libs.apache.commons.csv)
testImplementation(libs.cwms.tomcat.auth)
testImplementation(libs.apache.freemarker)

testRuntimeOnly("org.slf4j:slf4j-jdk14:2.0.16")

webjars(project(":cda-gui"))


Expand Down Expand Up @@ -256,6 +264,7 @@ task run(type: JavaExec) {
args "$buildDir/tomcat", "$buildDir/libs/${project.name}-${project.version}.war", context
jvmArgs += "-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager"
jvmArgs += "-Djava.util.logging.config.file=$projectDir/logging.properties"
jvmArgs += "-Dlogback.configurationFile=${projectDir}/logback.xml"
jvmArgs += "-DTOMCAT_RESOURCES=$buildDir/tomcat/conf/context.xml"
jvmArgs += "-Dorg.apache.tomcat.util.digester.PROPERTY_SOURCE=org.apache.tomcat.util.digester.EnvironmentPropertySource"
jvmArgs += "-Dcatalina.base=$buildDir/tomcat"
Expand Down Expand Up @@ -285,6 +294,7 @@ task integrationTests(type: Test) {
jvmArgs += "-DwarContext=/cwms-data"
jvmArgs += "-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager"
jvmArgs += "-Djava.util.logging.config.file=$projectDir/logging.properties"
jvmArgs += "-Dlogback.configurationFile=${projectDir}/logback.xml"
jvmArgs += "-Dorg.apache.tomcat.util.digester.PROPERTY_SOURCE=org.apache.tomcat.util.digester.EnvironmentPropertySource"
jvmArgs += "-Dcwms.dataapi.access.provider=MultipleAccessManager"
jvmArgs += "-Dcwms.dataapi.access.providers=KeyAccessManager,CwmsAccessManager"
Expand All @@ -302,6 +312,7 @@ task prepareDockerBuild(type: Copy, dependsOn: war) {

from(configurations.baseLibs) {
into "libs"
//exclude "**/logback*"
}

from(sourceSets.test.resources) {
Expand Down
40 changes: 40 additions & 0 deletions cwms-data-api/logback.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,40 @@
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE configuration>
<configuration>
<import class="ch.qos.logback.classic.encoder.JsonEncoder"/>
<import class="ch.qos.logback.core.ConsoleAppender"/>
<import class="ch.qos.logback.core.FileAppender"/>
<variable name="LOG_LEVEL" value="${LOG_LEVEL:-FINE}"/>
<contextName>CWMS-Data-API</contextName>
<appender name="STDERR" class="ConsoleAppender">
<encoder class="JsonEncoder"/>
<target>System.err</target>
</appender>

<appender name="FILE" class="FileAppender">
<encoder class="JsonEncoder"/>
<append>false</append>
<immediateFlush>true</immediateFlush>
<file>build/cda.jsonl</file>
</appender>

<appender name="FILE-PLAIN" class="FileAppender">
<encoder>
<!-- Format includes date, level, MDC userId, and message -->
<pattern>%d [%thread] %-5level - %X{traceId:-none} - %logger - %msg %ex %n</pattern>
</encoder>
<append>false</append>
<immediateFlush>true</immediateFlush>
<file>build/cda-plain.log</file>
</appender>

<logger name="cwms.cda" level="${LOG_LEVEL}"/>
<logger name="fixtures" level="${LOG_LEVEL}"/>
<logger name="org.apache" level="ERROR"/>

<root level="INFO">
<appender-ref ref="STDERR"/>
<appender-ref ref="FILE"/>
<appender-ref ref="FILE-PLAIN"/>
</root>
</configuration>
8 changes: 8 additions & 0 deletions cwms-data-api/src/docker/app-context.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<Context antiResourceLocking="true" delegate="true">
<ResourceLink
name="jdbc/CWMS3"
global="jdbc/CWMS3"
type="javax.sql.DataSource"
/>
</Context>
29 changes: 29 additions & 0 deletions cwms-data-api/src/docker/logback-juli.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE configuration>
<configuration debug="true">
<import class="org.apache.juli.logging.ch.qos.logback.classic.encoder.JsonEncoder"/>
<import class="org.apache.juli.logging.ch.qos.logback.core.ConsoleAppender"/>

<variable name="LOG_LEVEL" value="${LOG_LEVEL:-INFO}"/>
<contextName>CWMS-Data-API</contextName>
<appender name="STDERR" class="ConsoleAppender">
<encoder class="JsonEncoder"/>
<target>System.err</target>
</appender>

<logger name="cwms.cda" level="${LOG_LEVEL}"/>
<logger name="org.apache" level="ERROR"/>

<logger name="org.apache.catalina" level="INFO" additivity="false">
<appender-ref ref="STDERR" />
</logger>

<logger name="org.apache.catalina.core.ContainerBase.[Catalina]" level="INFO" additivity="false">
<appender-ref ref="STDERR" />
</logger>


<root level="INFO">
<appender-ref ref="STDERR"/>
</root>
</configuration>
29 changes: 29 additions & 0 deletions cwms-data-api/src/docker/logback.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE configuration>
<configuration debug="true">
<import class="ch.qos.logback.classic.encoder.JsonEncoder"/>
<import class="ch.qos.logback.core.ConsoleAppender"/>

<variable name="LOG_LEVEL" value="${LOG_LEVEL:-INFO}"/>
<contextName>CWMS-Data-API</contextName>
<appender name="STDERR" class="ConsoleAppender">
<encoder class="JsonEncoder"/>
<target>System.err</target>
</appender>

<logger name="cwms.cda" level="${LOG_LEVEL}"/>
<logger name="org.apache" level="ERROR"/>

<logger name="org.apache.catalina" level="INFO" additivity="false">
<appender-ref ref="STDERR" />
</logger>

<logger name="org.apache.catalina.core.ContainerBase.[Catalina]" level="INFO" additivity="false">
<appender-ref ref="STDERR" />
</logger>


<root level="INFO">
<appender-ref ref="STDERR"/>
</root>
</configuration>
6 changes: 5 additions & 1 deletion cwms-data-api/src/docker/setenv.sh
Original file line number Diff line number Diff line change
@@ -1 +1,5 @@
export CATALINA_OPTS="$CATALINA_OPTS -Dorg.apache.tomcat.util.digester.PROPERTY_SOURCE=org.apache.tomcat.util.digester.EnvironmentPropertySource"
CATALINA_OPTS="$CATALINA_OPTS -Dorg.apache.tomcat.util.digester.PROPERTY_SOURCE=org.apache.tomcat.util.digester.EnvironmentPropertySource"
CATALINA_OPTS="$CATALINA_OPTS -Djuli-logback.configurationFile=/logback-juli.xml -Djuli-logback.ContextSelector=JNDI"
CATALINA_OPTS="$CATALINA_OPTS -Dlogback.configurationFile=/logback.xml -Dlogback.ContextSelector=JNDI"

export CATALINA_OPTS
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