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rajeejarajeeja
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o Add MPI flags for CI
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‎.github/workflows/yac-optional.yml‎

Lines changed: 124 additions & 122 deletions
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name: YAC Optional CI
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on:
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pull_request:
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paths:
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- ".github/workflows/yac-optional.yml"
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- "uxarray/remap/**"
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- "test/test_remap_yac.py"
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workflow_dispatch:
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jobs:
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yac-optional:
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name: YAC v3.9.3 (Ubuntu)
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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YAC_VERSION: v3.9.3
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YAXT_VERSION: v0.11.5
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steps:
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- name: checkout
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uses: actions/checkout@v4
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with:
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token: ${{ github.token }}
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- name: conda_setup
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uses: conda-incubator/setup-miniconda@v3
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with:
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activate-environment: uxarray_build
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channel-priority: strict
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python-version: "3.11"
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channels: conda-forge
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environment-file: ci/environment.yml
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miniforge-variant: Miniforge3
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miniforge-version: latest
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- name: Install build dependencies (apt)
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run: |
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sudo apt-get update
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sudo apt-get install -y \
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autoconf \
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automake \
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gawk \
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gfortran \
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libfyaml-dev \
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libnetcdf-dev \
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libopenmpi-dev \
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libtool \
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make \
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openmpi-bin \
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pkg-config
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- name: Install Python build dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install cython mpi4py wheel
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- name: Build and install YAXT
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run: |
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set -euxo pipefail
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YAC_PREFIX="${GITHUB_WORKSPACE}/yac_prefix"
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echo "YAC_PREFIX=${YAC_PREFIX}" >> "${GITHUB_ENV}"
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git clone --depth 1 --branch "${YAXT_VERSION}" https://gitlab.dkrz.de/dkrz-sw/yaxt.git
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if [ ! -x yaxt/configure ]; then
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if [ -x yaxt/autogen.sh ]; then
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(cd yaxt && ./autogen.sh)
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else
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(cd yaxt && autoreconf -i)
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fi
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fi
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mkdir -p yaxt/build
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cd yaxt/build
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../configure --prefix="${YAC_PREFIX}" CC=mpicc FC=mpif90
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make -j2
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make install
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- name: Build and install YAC
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run: |
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set -euxo pipefail
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git clone --depth 1 --branch "${YAC_VERSION}" https://gitlab.dkrz.de/dkrz-sw/yac.git
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if [ ! -x yac/configure ]; then
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if [ -x yac/autogen.sh ]; then
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(cd yac && ./autogen.sh)
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else
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(cd yac && autoreconf -i)
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fi
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fi
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mkdir -p yac/build
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cd yac/build
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../configure \
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--prefix="${YAC_PREFIX}" \
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--with-yaxt-root="${YAC_PREFIX}" \
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--with-netcdf-root="${CONDA_PREFIX}" \
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--with-fyaml-root=/usr \
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--enable-python-bindings \
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CC=mpicc \
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FC=mpif90
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make -j2
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make install
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- name: Configure YAC runtime paths
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run: |
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set -euxo pipefail
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PY_VER="$(python -c 'import sys; print(f"{sys.version_info.major}.{sys.version_info.minor}")')"
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echo "LD_LIBRARY_PATH=${YAC_PREFIX}/lib:${LD_LIBRARY_PATH:-}" >> "${GITHUB_ENV}"
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echo "PYTHONPATH=${YAC_PREFIX}/lib/python${PY_VER}/site-packages:${YAC_PREFIX}/lib/python${PY_VER}/dist-packages:${PYTHONPATH:-}" >> "${GITHUB_ENV}"
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- name: Verify YAC Python bindings
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run: |
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python - <<'PY'
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import yac
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print("YAC version:", getattr(yac, "__version__", "unknown"))
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PY
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- name: Install uxarray
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run: |
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python -m pip install . --no-deps
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- name: Run tests (uxarray with YAC)
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run: |
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python -m pytest test/test_remap_yac.py
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name: YAC Optional CI
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on:
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pull_request:
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paths:
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- ".github/workflows/yac-optional.yml"
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- "uxarray/remap/**"
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- "test/test_remap_yac.py"
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workflow_dispatch:
10+
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jobs:
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yac-optional:
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name: YAC v3.9.3 (Ubuntu)
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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YAC_VERSION: v3.9.3
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YAXT_VERSION: v0.11.5
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OMPI_ALLOW_RUN_AS_ROOT: 1
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OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
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steps:
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- name: checkout
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uses: actions/checkout@v4
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with:
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token: ${{ github.token }}
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- name: conda_setup
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uses: conda-incubator/setup-miniconda@v3
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with:
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activate-environment: uxarray_build
33+
channel-priority: strict
34+
python-version: "3.11"
35+
channels: conda-forge
36+
environment-file: ci/environment.yml
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miniforge-variant: Miniforge3
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miniforge-version: latest
39+
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- name: Install build dependencies (apt)
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run: |
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sudo apt-get update
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sudo apt-get install -y \
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autoconf \
45+
automake \
46+
gawk \
47+
gfortran \
48+
libfyaml-dev \
49+
libnetcdf-dev \
50+
libopenmpi-dev \
51+
libtool \
52+
make \
53+
openmpi-bin \
54+
pkg-config
55+
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- name: Install Python build dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install cython mpi4py wheel
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- name: Build and install YAXT
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run: |
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set -euxo pipefail
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YAC_PREFIX="${GITHUB_WORKSPACE}/yac_prefix"
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echo "YAC_PREFIX=${YAC_PREFIX}" >> "${GITHUB_ENV}"
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git clone --depth 1 --branch "${YAXT_VERSION}" https://gitlab.dkrz.de/dkrz-sw/yaxt.git
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if [ ! -x yaxt/configure ]; then
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if [ -x yaxt/autogen.sh ]; then
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(cd yaxt && ./autogen.sh)
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else
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(cd yaxt && autoreconf -i)
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fi
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fi
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mkdir -p yaxt/build
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cd yaxt/build
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../configure --prefix="${YAC_PREFIX}" CC=mpicc FC=mpif90
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make -j2
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make install
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- name: Build and install YAC
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run: |
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set -euxo pipefail
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git clone --depth 1 --branch "${YAC_VERSION}" https://gitlab.dkrz.de/dkrz-sw/yac.git
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if [ ! -x yac/configure ]; then
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if [ -x yac/autogen.sh ]; then
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(cd yac && ./autogen.sh)
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else
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(cd yac && autoreconf -i)
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fi
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fi
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mkdir -p yac/build
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cd yac/build
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../configure \
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--prefix="${YAC_PREFIX}" \
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--with-yaxt-root="${YAC_PREFIX}" \
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--with-netcdf-root="${CONDA_PREFIX}" \
97+
--with-fyaml-root=/usr \
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--enable-python-bindings \
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CC=mpicc \
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FC=mpif90
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make -j2
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make install
103+
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- name: Configure YAC runtime paths
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run: |
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set -euxo pipefail
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PY_VER="$(python -c 'import sys; print(f"{sys.version_info.major}.{sys.version_info.minor}")')"
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echo "LD_LIBRARY_PATH=${YAC_PREFIX}/lib:${LD_LIBRARY_PATH:-}" >> "${GITHUB_ENV}"
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echo "PYTHONPATH=${YAC_PREFIX}/lib/python${PY_VER}/site-packages:${YAC_PREFIX}/lib/python${PY_VER}/dist-packages:${PYTHONPATH:-}" >> "${GITHUB_ENV}"
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- name: Verify YAC Python bindings
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run: |
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python - <<'PY'
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import yac
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print("YAC version:", getattr(yac, "__version__", "unknown"))
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PY
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- name: Install uxarray
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run: |
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python -m pip install . --no-deps
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- name: Run tests (uxarray with YAC)
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run: |
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python -m pytest test/test_remap_yac.py

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