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add workspace specific tables
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‎docs/workspaces/plain/windows.qmd‎

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{{< include partials/_windows.qmd >}}
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Use this table to find the appropriate data transfer method for your situation:
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| Data Source | Recommended Tool | Best For | Skill Level |
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|------------|------------------|----------|-------------|
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| Yoda/iRODS | [iBridges](../../manuals/ibridges.qmd) (Pre-installed on "Windows with iBridges" flavor) | All file sizes, GUI interface | Beginner to Intermediate |
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| SURFdrive, ResearchDrive, OneDrive | [rclone](../../manuals/rclone-researchcloud.qmd) | Cloud storage sync, scheduled transfers | Intermediate (CLI) |
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| Your PC/laptop | [scp](../../manuals/ssh-data-transfer-methods.qmd) | Direct one-time transfers | Intermediate (CLI) |
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| Your PC/laptop | [rsync](../../manuals/ssh-data-transfer-methods.qmd) | Sync or repeated transfers | Intermediate (CLI) |
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| Your PC/laptop (Windows only) | [MobaXterm](https://servicedesk.surf.nl/wiki/spaces/WIKI/pages/92668162/Transfer+files+between+to+and+from+the+system#Transferfilesbetweentoandfromthesystem-SFTPforMobaXtermusers) | Graphical SSH/SFTP | Intermediate |
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| Your PC/laptop | [Cyberduck](https://servicedesk.surf.nl/wiki/spaces/WIKI/pages/112592488/Upload+data+to+a+workspace+with+Cyberduck) | Graphical SFTP client | Intermediate |
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| GitHub/GitLab | [git clone](../../manuals/git-clone.qmd) | Code repositories, version control | Intermediate (CLI) |
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:::{.callout-note}
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# Transferring Single Files via the Desktop Interface
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You can also transfer files directly from your PC to the workspace and vice-versa. **However, this works only for small and individual files**.
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- Open your windows workspace.
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- In the top left, click on the three dots. Then select `Files` from the options that appear.
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- Here you can choose individual files to upload from your local PC to the workspace, or download files from the workspace to your local PC.
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:::

‎docs/workspaces/programming/jupyter.qmd‎

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When logged in you are immediately presented with a JupyterLab environment in which you can work with different notebooks.
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{{< include ../partials/_data_transfer.qmd >}}
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### Data Transfer Jupyter Notebook
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You will have to run the relevant commands for the data transfer method of your choice from within [the JupyterLab terminal](https://jupyterlab.readthedocs.io/en/latest/user/terminal.html#terminals).
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Use this table to find the appropriate data transfer method for your situation:
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| Data Source | Recommended Tool | Best For | Skill Level |
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|------------|------------------|----------|-------------|
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| Your PC/laptop | [JupyterLab Upload button](#using-the-upload-button) | Small files, quick uploads | Beginner (GUI) |
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| Yoda/iRODS | [iBridges](../../manuals/ibridges.qmd) | All file sizes, CLI access | Beginner to Intermediate |
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| Yoda/iRODS | [iCommands](../../manuals/icommands.qmd) | Large datasets, transfer automation, CLI | Intermediate (CLI) |
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| SURFdrive, ResearchDrive, OneDrive | [rclone](../../manuals/rclone-researchcloud.qmd) | Cloud storage sync, scheduled transfers | Intermediate (CLI) |
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| Your PC/laptop | [scp](../../manuals/ssh-data-transfer-methods.qmd) | Direct one-time transfers | Intermediate (CLI) |
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| Your PC/laptop | [rsync](../../manuals/ssh-data-transfer-methods.qmd) | Sync or repeated transfers | Intermediate (CLI) |
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| Your PC/laptop (Windows only) | [MobaXterm](https://mobaxterm.mobatek.net/) | Graphical SSH/SFTP client | Intermediate |
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| Your PC/laptop | [Cyberduck](https://servicedesk.surf.nl/wiki/spaces/WIKI/pages/112592488/Upload+data+to+a+workspace+with+Cyberduck)| Graphical SFTP client | Intermediate |
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| GitHub/GitLab | [git clone](../../manuals/git-clone.qmd) | Code repositories, version control | Intermediate (CLI) |
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::: {.callout-tip #using-the-upload-button}
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### Using the Upload Button
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For small files, use the Upload button in the JupyterLab file browser (left sidebar):
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1. Click the **Upload Files** icon (↑) in the file browser toolbar
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2. Select files from your local computer
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3. Files will be uploaded to your current directory
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:::
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::: {.callout-note}
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All command-line tools (iBridges CLI, iCommands, rclone, scp/rsync, Git) must be run from the [JupyterLab terminal](https://jupyterlab.readthedocs.io/en/stable/user/terminal.html).
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:::
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See our [data transfer manuals](../../manuals.qmd#data-transfer) for detailed step-by-step guides.
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### Installing additional software

‎docs/workspaces/programming/python-workbench.qmd‎

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Note that when you create a python environment using any of the tools above, you create a python environment for yourself only and not for others in your [Collaboration](../../glossary.qmd#collaboration). If you collaborate, you colleague should creaate their own python environment. We recommend collaborating using GitHub and `uv` (using a `uv.lock` file) to make sure your environments are the same. If this is not desired, create the environments in a shared location, like `/local-share`.
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:::
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{{< include ../partials/_data_transfer.qmd >}}
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### Data Transfer Options
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Use this table to find the appropriate data transfer method for your situation:
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| Data Source | Recommended Tool | Best For | Skill Level |
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|------------|------------------|----------|-------------|
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| Yoda/iRODS | [iBridges](../../manuals/ibridges.qmd) (Recommended, pre-installed) | All file sizes, GUI and CLI access | Beginner to Intermediate |
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| Yoda/iRODS | [iCommands](../../manuals/icommands.qmd) | Large datasets, transfer automation, CLI | Intermediate (CLI) |
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| SURFdrive, ResearchDrive, OneDrive | [rclone](../../manuals/rclone-researchcloud.qmd) | Cloud storage sync, scheduled transfers | Intermediate (CLI) |
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| Your PC/laptop | Browser upload (Desktop only) | Small files, quick uploads | Beginner (GUI) |
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| Your PC/laptop | [scp](../../manuals/ssh-data-transfer-methods.qmd) | Direct one-time transfers | Intermediate (CLI) |
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| Your PC/laptop | [rsync](../../manuals/ssh-data-transfer-methods.qmd) | Sync or repeated transfers | Intermediate (CLI) |
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| Your PC/laptop (Windows only) | [MobaXterm](https://mobaxterm.mobatek.net/) | Graphical SSH/SFTP client | Intermediate |
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| Your PC/laptop | [Cyberduck](https://servicedesk.surf.nl/wiki/spaces/WIKI/pages/112592488/Upload+data+to+a+workspace+with+Cyberduck)| Graphical SFTP client | Intermediate |
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| GitHub/GitLab | [git clone](../../manuals/git-clone.qmd) | Code repositories, version control | Intermediate (CLI) |
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See our [data transfer manuals](../../manuals.qmd#data-transfer) for detailed step-by-step guides.
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The recommended [iBridges client for Yoda and iRODS](../../manuals/ibridges.qmd) is preinstalled.
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#### VSCodium code editor (Desktop only)
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‎docs/workspaces/programming/vre-lab.qmd‎

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- Integrated [terminal](https://jupyterlab.readthedocs.io/en/latest/user/terminal.html#terminals) access
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{{< include ../partials/_data_transfer.qmd >}}
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You can also upload data directly to the workspace using the `Upload Files` button in the JupyterLab interface.
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Use this table to find the appropriate data transfer method for your situation:
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| Data Source | Recommended Tool | Best For | Skill Level |
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|------------|------------------|----------|-------------|
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| Your PC/laptop | JupyterLab Upload button | Small files, quick uploads | Beginner (GUI) |
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| Yoda/iRODS | [iBridges](../../manuals/ibridges.qmd) | All file sizes, CLI access | Beginner to Intermediate |
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| Yoda/iRODS | [iCommands](../../manuals/icommands.qmd) | Large datasets, transfer automation, CLI | Intermediate (CLI) |
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| SURFdrive, ResearchDrive, OneDrive | [rclone](../../manuals/rclone-researchcloud.qmd) | Cloud storage sync, scheduled transfers | Intermediate (CLI) |
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| Your PC/laptop | [scp](../../manuals/ssh-data-transfer-methods.qmd) | Direct one-time transfers | Intermediate (CLI) |
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| Your PC/laptop | [rsync](../../manuals/ssh-data-transfer-methods.qmd) | Sync or repeated transfers | Intermediate (CLI) |
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| Your PC/laptop (Windows only) | [MobaXterm](https://mobaxterm.mobatek.net/) | Graphical SSH/SFTP client | Intermediate |
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| Your PC/laptop | [Cyberduck](https://servicedesk.surf.nl/wiki/spaces/WIKI/pages/112592488/Upload+data+to+a+workspace+with+Cyberduck)| Graphical SFTP client | Intermediate |
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| GitHub/GitLab | [git clone](../../manuals/git-clone.qmd) | Code repositories, version control | Intermediate (CLI) |
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You can upload data directly to the workspace using the `Upload Files` button in the JupyterLab interface.
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![Upload Files](../imgs/jupyter-upload-button.png){width=300px}
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