LungCancerDataExtraction/testLog.txt at main · ValeMTo/LungCancerDataExtraction · GitHub

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<<<<<<< 67a0d1f96421c828bb5d4b39a6ff424b6f88aec3
=======
<<<<<<< 288b11988edd04f6e58adbc263d520e3b88abb5c
WARNING:radiomics.glcm: GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
=======
INFO:radiomics.featureextractor: No valid config parameter, using defaults: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True}
INFO:radiomics.featureextractor: Enabled image types: {'Original': {}}
INFO:radiomics.featureextractor: Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []}
INFO:radiomics.featureextractor: Calculating features with label: 1
DEBUG:radiomics.featureextractor: Enabled images types: {'Original': {}}
DEBUG:radiomics.featureextractor: Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []}
DEBUG:radiomics.featureextractor: Current settings: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True}
INFO:radiomics.featureextractor: Loading image and mask
DEBUG:radiomics.imageoperations: Force casting mask to UInt32 to ensure correct datatype.
DEBUG:radiomics.imageoperations: Checking mask with label 1
DEBUG:radiomics.imageoperations: Calculating bounding box
DEBUG:radiomics.imageoperations: Checking minimum number of dimensions requirements (2)
DEBUG:radiomics.featureextractor: Image and Mask loaded and valid, starting extraction
DEBUG:radiomics.imageoperations: Cropping to size [26 33  6]
INFO:radiomics.featureextractor: Computing shape
DEBUG:radiomics.shape: Initializing feature class
DEBUG:radiomics.shape: Padding the mask with 0s
DEBUG:radiomics.shape: Pre-calculate Volume, Surface Area and Eigenvalues
DEBUG:radiomics.shape: Shape feature class initialized
DEBUG:radiomics.shape: Calculating features
DEBUG:radiomics.featureextractor: Creating image type iterator
INFO:radiomics.featureextractor: Adding image type "Original" with custom settings: {}
DEBUG:radiomics.featureextractor: Extracting features
DEBUG:radiomics.imageoperations: Yielding original image
INFO:radiomics.featureextractor: Calculating features for original image
DEBUG:radiomics.imageoperations: Cropping to size [26 33  6]
INFO:radiomics.featureextractor: Computing firstorder
DEBUG:radiomics.firstorder: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.firstorder: First order feature class initialized
DEBUG:radiomics.firstorder: Calculating features
INFO:radiomics.featureextractor: Computing glcm
DEBUG:radiomics.glcm: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.glcm: Calculating GLCM matrix in C
DEBUG:radiomics.glcm: Process calculated matrix
DEBUG:radiomics.glcm: Create symmetrical matrix
DEBUG:radiomics.glcm: No empty angles
DEBUG:radiomics.glcm: Calculating GLCM coefficients
DEBUG:radiomics.glcm: GLCM feature class initialized, calculated GLCM with shape (1, 44, 44, 13)
DEBUG:radiomics.glcm: Calculating features
WARNING:radiomics.glcm: GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
INFO:radiomics.featureextractor: Computing gldm
DEBUG:radiomics.gldm: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.gldm: Calculating GLDM matrix in C
DEBUG:radiomics.gldm: Feature class initialized, calculated GLDM with shape (1, 44, 20)
DEBUG:radiomics.gldm: Calculating features
INFO:radiomics.featureextractor: Computing glrlm
DEBUG:radiomics.glrlm: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.glrlm: Calculating GLRLM matrix in C
DEBUG:radiomics.glrlm: Process calculated matrix
DEBUG:radiomics.glrlm: No empty angles
DEBUG:radiomics.glrlm: Calculating GLRLM coefficients
DEBUG:radiomics.glrlm: GLRLM feature class initialized, calculated GLRLM with shape (1, 44, 9, 13)
DEBUG:radiomics.glrlm: Calculating features
INFO:radiomics.featureextractor: Computing glszm
DEBUG:radiomics.glszm: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.glszm: Calculating GLSZM matrix in C
DEBUG:radiomics.glszm: Calculating GLSZM coefficients
DEBUG:radiomics.glszm: GLSZM feature class initialized, calculated GLSZM with shape (1, 44, 20)
DEBUG:radiomics.glszm: Calculating features
INFO:radiomics.featureextractor: Computing ngtdm
DEBUG:radiomics.ngtdm: Initializing feature class
DEBUG:radiomics.imageoperations: Discretizing gray levels inside ROI
DEBUG:radiomics.imageoperations: Calculated 47 bins for bin width 25 with edges: [-850 -825 -800 -775 -750 -725 -700 -675 -650 -625 -600 -575 -550 -525
 -500 -475 -450 -425 -400 -375 -350 -325 -300 -275 -250 -225 -200 -175
 -150 -125 -100  -75  -50  -25    0   25   50   75  100  125  150  175
  200  225  250  275  300  325])
DEBUG:radiomics.ngtdm: Calculating features
DEBUG:radiomics.featureextractor: Features extracted
>>>>>>> Report finished
>>>>>>> Report finished