Merge pull request #128 from VectorInstitute/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

Author: amrit110

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0  # Use the ref you want to point at
+    rev: v6.0.0  # Use the ref you want to point at
     hooks:
     - id: trailing-whitespace
     - id: check-ast
@@ -16,7 +16,7 @@ repos:
     - id: check-toml
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.11.7'
+    rev: 'v0.13.0'
     hooks:
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]
@@ -25,7 +25,7 @@ repos:
       types_or: [python, jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.15.0
+    rev: v1.18.1
     hooks:
     - id: mypy
       entry: python3 -m mypy --config-file pyproject.toml

odyssey/models/baseline/Bi-LSTM.py

@@ -7,6 +7,7 @@
 import numpy as np
 import pandas as pd
 import torch
+from odyssey.models.cehr_big_bird.embeddings import Embeddings
 from sklearn.metrics import (
     balanced_accuracy_score,
 )
@@ -19,7 +20,6 @@
 
 from odyssey.data.dataset import FinetuneDataset
 from odyssey.data.tokenizer import HuggingFaceConceptTokenizer
-from odyssey.models.cehr_big_bird.embeddings import Embeddings
 
 
 ROOT = "/fs01/home/afallah/odyssey/odyssey"