ajout du dicom web server Orthanc du front dans le back

Author: Romain Andres

.gitignore

@@ -3,4 +3,6 @@
 /App/unetr/pretrained_models/*
 .env
 *.dcm
-/MetIA
+/MetIA
+./Orthanc/orthanc_db/*
+/Orthanc/orthanc_db/*

BDD/__pycache__/MesuresSQLite.cpython-38.pyc

@@ -0,0 +1,79 @@
+#!/usr/bin/python
+
+import os
+import sys
+import os.path
+import httplib2
+import base64
+
+if len(sys.argv) != 4 and len(sys.argv) != 6:
+    print("""
+Sample script to recursively import in Orthanc all the DICOM files
+that are stored in some path. Please make sure that Orthanc is running
+before starting this script. The files are uploaded through the REST
+API.
+
+Usage: %s [hostname] [HTTP port] [path]
+Usage: %s [hostname] [HTTP port] [path] [username] [password]
+For instance: %s localhost 8042 .
+""" % (sys.argv[0], sys.argv[0], sys.argv[0]))
+    exit(-1)
+
+URL = 'http://%s:%d/instances' % (sys.argv[1], int(sys.argv[2]))
+
+success = 0
+
+
+# This function will upload a single file to Orthanc through the REST API
+def UploadFile(path):
+    global success
+
+    f = open(path, "rb")
+    content = f.read()
+    f.close()
+
+    try:
+        sys.stdout.write("Importing %s" % path)
+
+        h = httplib2.Http()
+
+        headers = { 'content-type' : 'application/dicom' }
+
+        if len(sys.argv) == 6:
+            username = sys.argv[4]
+            password = sys.argv[5]
+
+            # h.add_credentials(username, password)
+
+            # This is a custom reimplementation of the
+            # "Http.add_credentials()" method for Basic HTTP Access
+            # Authentication (for some weird reason, this method does
+            # not always work)
+            # http://en.wikipedia.org/wiki/Basic_access_authentication
+            headers['authorization'] = 'Basic ' + base64.b64encode(username + ':' + password)       
+            
+        resp, content = h.request(URL, 'POST', 
+                                  body = content,
+                                  headers = headers)
+
+        if resp.status == 200:
+            sys.stdout.write(" => success\n")
+            success += 1
+        else:
+            sys.stdout.write(" => failure (Is it a DICOM file?)\n")
+
+    except:
+        sys.stdout.write(" => unable to connect (Is Orthanc running? Is there a password?)\n")
+
+
+if os.path.isfile(sys.argv[3]):
+    # Upload a single file
+    UploadFile(sys.argv[3])
+else:
+    # Recursively upload a directory
+    for root, dirs, files in os.walk(sys.argv[3]):
+        for f in files:
+            UploadFile(os.path.join(root, f))
+        
+
+print("\nSummary: %d DICOM file(s) have been imported" % success)

Notebooks de test/ImportDicomFiles.py

@@ -0,0 +1,46 @@
+version: "3"
+services:
+  pacs:
+    container_name: orthanc
+    image: jodogne/orthanc-plugins
+    ports:
+      - 8042:8042
+      - 4242:4242
+    volumes:
+      - ./orthanc.json:/etc/orthanc/orthanc.json:ro
+      - ./orthanc_db:/var/lib/orthanc/db/
+    restart: always
+    networks:
+      - pacs
+
+  nginx:
+    image: nginx:latest
+    container_name: nginx_cors
+    depends_on:
+      - pacs
+    volumes:
+      - ./nginx.conf:/etc/nginx/nginx.conf:ro
+    ports:
+      - "8080:80"
+    networks:
+      - pacs
+
+  # COMMENTE CAR J'UTILISE OHIF EN LOCAL !
+  #ohif_viewer:
+  #  container_name: ohif
+  #  image: ohif/viewer
+  #  ports:
+  #    - 3000:80
+  #  environment:
+  #    - APP_CONFIG:/usr/share/nginx/html/app-config.js
+  #  volumes:
+  #    - ./nginx_ohif.conf:/etc/nginx/conf.d/default.conf:ro
+  #    - ./ohif.js:/usr/share/nginx/html/app-config.js:ro
+  #    - ./logo.png:/usr/share/nginx/html/logo.png:ro
+  #  restart: always
+  #  networks:
+  #    - pacs
+
+networks:
+  pacs:
+    external: true

metaDataDCMAnalyzer.ipynb …ebooks de test/metaDataDCMAnalyzer.ipynbmetaDataDCMAnalyzer.ipynb renamed to Notebooks de test/metaDataDCMAnalyzer.ipynb metaDataDCMAnalyzer.ipynb renamed to Notebooks de test/metaDataDCMAnalyzer.ipynb

@@ -0,0 +1,33 @@
+events { }
+
+http {
+    server {
+    listen 80;
+
+    location / {
+        proxy_pass http://pacs:8042;
+        proxy_set_header Host $host;
+        proxy_set_header X-Real-IP $remote_addr;
+        proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+        proxy_set_header X-Forwarded-Proto $scheme;
+
+        # Gestion des requêtes OPTIONS pour CORS
+        if ($request_method = 'OPTIONS') {
+            add_header 'Access-Control-Allow-Origin' '*';
+            add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS';
+            add_header 'Access-Control-Allow-Headers' 'DNT,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Range';
+            add_header 'Access-Control-Expose-Headers' 'Content-Length,Content-Range';
+            add_header 'Access-Control-Max-Age' 1728000;
+            add_header 'Content-Type' 'text/plain charset=UTF-8';
+            add_header 'Content-Length' 0;
+            return 204;
+        }
+
+        # Ajout des en-têtes CORS pour les autres méthodes
+        add_header 'Access-Control-Allow-Origin' '*' always;
+        add_header 'Access-Control-Allow-Methods' 'GET, POST, OPTIONS' always;
+        add_header 'Access-Control-Allow-Headers' 'DNT,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Range' always;
+        add_header 'Access-Control-Expose-Headers' 'Content-Length,Content-Range' always;
+    }
+}
+}