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‎ID_tables/catmaid_fanc_ID_table.tsv‎

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‎ID_tables/neuronbridge_ID_table.tsv‎

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‎content_report.md‎

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Report of content found at ``http://pdb.virtualflybrain.org`` on ``Wed, 30 Jul 2025 10:50:04``
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Report of content found at ``http://pdb.virtualflybrain.org`` on ``Wed, 30 Jul 2025 18:15:06``
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***``Ontology Content``***
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|Anatomy|Classes|Publications|
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| :--- | :--- | :--- |
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|All Terms|28647|1934|
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|All Nervous System Parts|21745|1416|
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|All Neurons|18220|1128|
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|Characterised Neurons|6800|1125|
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|Provisional Neurons|11420|26|
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|All Nervous System Regions|1434|252|
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|Synaptic Neuropils|625|142|
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|Neuron Projection Bundles|599|128|
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|All Terms|28647|1926|
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|All Nervous System Parts|21745|1415|
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|All Neurons|18220|1126|
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|Characterised Neurons|6800|1123|
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|Provisional Neurons|11420|27|
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|All Nervous System Regions|1434|255|
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|Synaptic Neuropils|625|143|
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|Neuron Projection Bundles|599|129|
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|Cell Body Rinds|132|8|
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|Sense Organs|859|166|
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|Sense Organs|859|165|
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**160151** formal assertions, of which **69313** are SubClassOf assertions and **90838** are other relationship types
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*``(excludes hemibrain v1.0.1)``*
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**360080** total images from **116** datasets
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**277775** single neuron images of **14219** cell types
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**277775** single neuron images of **14205** cell types
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**44790** images of expression patterns of **17150** drivers
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**3840** images of expression patterns of **853** split combinations
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**61162** images of expression pattern fragments of **5105** drivers
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***``Annotations``***
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**95259** annotations recording **3341** types of anatomical structure that **12952** specific driver lines are expressed in.
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**87267** annotations recording **2500** parts of the nervous system that **11753** specific driver lines are expressed in.
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**11318** annotations recording **1695** types of neuron that **3089** specific driver lines are expressed in.
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**4487** annotations recording **605** types of neuron that **1148** specific split combinations are expressed in.
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**93541** annotations recording **3240** types of anatomical structure that **12774** specific driver lines are expressed in.
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**85582** annotations recording **2405** parts of the nervous system that **11590** specific driver lines are expressed in.
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**10508** annotations recording **1631** types of neuron that **2922** specific driver lines are expressed in.
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**4514** annotations recording **620** types of neuron that **1162** specific split combinations are expressed in.
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***``Connectivity``***
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|Neuron|Number of Neurons|Input/Output Entity|Number of Entities|Connections|
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| :--- | :--- | :--- | :--- | :--- |
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|Any neuron (individuals)|107393|Any neuron (individuals)|107393|10561897|
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|Any neuron (individuals)|107393|Any neuron (individuals)|107393|10561999|
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|Any neuron (individuals)|22590|Region (individuals)|218|299710|
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|Any neuron (classes)|1661|Muscle (classes)|233|2144|
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|Any neuron (classes)|775|Sense organ (classes)|435|536|

‎individual_classification_KB_PDB.tsv‎

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‎pdb_dev_diff.tsv‎

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ds.short_form server ds.label license pub individuals NBLAST NBLASTexp ontology_terms exp_cur
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Andrade2019 dev EM L1 Andrade et al. 2019 CC-BY-SA_4.0 FBrf0241389 847 828 0 27 0
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Andrade2019 pdb EM L1 Andrade et al. 2019 CC-BY-SA_4.0 FBrf0241389 847 0 0 27 0
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Aso2014 dev MBONs and split-GAL4 lines that target them (Aso2014) CC-BY_4.0 FBrf0227179 1922 0 821 108 0
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Aso2014 pdb MBONs and split-GAL4 lines that target them (Aso2014) CC-BY_4.0 FBrf0227179 1922 0 820 108 0
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Baltruschat2021 dev EM FAFB Baltruschat et al 2021 CC-BY-SA_4.0 FBrf0248487 20 20 19 8 0
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Baltruschat2021 pdb EM FAFB Baltruschat et al 2021 CC-BY-SA_4.0 FBrf0248487 20 1 1 8 0
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Barnes2022 dev EM L1 Barnes et al., 2022 CC-BY_4.0 FBrf0253082 51 51 0 26 0
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Barnes2022 pdb EM L1 Barnes et al., 2022 CC-BY_4.0 FBrf0253082 51 0 0 26 0
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BatesSchlegel2020 dev EM FAFB Bates and Schlegel et al 2020 CC-BY-SA_4.0 doi_10_1016_j_cub_2020_06_042 583 583 277 200 0
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BatesSchlegel2020 pdb EM FAFB Bates and Schlegel et al 2020 CC-BY-SA_4.0 doi_10_1016_j_cub_2020_06_042 583 159 100 200 0
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Berck2016 dev Larval olfactory system neurons - EM (Berk2016) CC-BY-SA_4.0 FBrf0232785 161 150 0 82 0
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Berck2016 pdb Larval olfactory system neurons - EM (Berk2016) CC-BY-SA_4.0 FBrf0232785 161 0 0 82 0
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Burgos2018 dev Nociceptive system neurons - EM (Burgos2017) CC-BY-SA_4.0 FBrf0238464 95 90 0 54 0
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Burgos2018 pdb Nociceptive system neurons - EM (Burgos2017) CC-BY-SA_4.0 FBrf0238464 95 0 0 54 0
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CarreiraRosario2018 dev EM L1 Carreira-Rosario, Arzan Zarin, Clark et al. 2018 CC-BY_4.0 FBrf0239825 31 23 0 17 0
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CarreiraRosario2018 pdb EM L1 Carreira-Rosario, Arzan Zarin, Clark et al. 2018 CC-BY_4.0 FBrf0239825 31 0 0 17 0
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Chiang2010 dev FlyCircuit 1.0 - single neurons (Chiang2010) FlyCircuit License FBrf0212704 16127 15929 7013 216 0
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Chiang2010 pdb FlyCircuit 1.0 - single neurons (Chiang2010) FlyCircuit License FBrf0212704 16127 15929 7008 216 0
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Coates2020 dev EM FAFB Coates et al 2020 CC-BY_4.0 doi_10_1523_JNEUROSCI_0552_20_2020 191 191 10 22 0
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Coates2020 pdb EM FAFB Coates et al 2020 CC-BY_4.0 doi_10_1523_JNEUROSCI_0552_20_2020 191 55 6 22 0
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Dolan2018 dev EM FAFB Dolan and Belliart-Guerin et al. 2018 CC-BY-SA_4.0 FBrf0240600 10 10 10 4 0
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Dolan2018 pdb EM FAFB Dolan and Belliart-Guerin et al. 2018 CC-BY-SA_4.0 FBrf0240600 10 5 5 4 0
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Dombrovski2023 dev EM FAFB Dombrovski et al 2023 CC-BY-SA_4.0 59 24 0 5 0
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Dombrovski2023 pdb EM FAFB Dombrovski et al 2023 CC-BY-SA_4.0 59 0 0 5 0
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Dorkenwald2023 dev FlyWire connectome neurons CC-BY-NC_4.0 doi_10_1101_2023_06_27_546656 139255 139242 21767 7494 0
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Dorkenwald2023 pdb FlyWire connectome neurons CC-BY-NC_4.0 doi_10_1101_2023_06_27_546656 139255 139242 21767 7322 0
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Eichler2017 dev Larval MB neurons - EM (Eichler2017) CC-BY-SA_4.0 FBrf0236359 388 354 0 79 0
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Eichler2017 pdb Larval MB neurons - EM (Eichler2017) CC-BY-SA_4.0 FBrf0236359 388 0 0 79 0
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Engert2022 dev EM FAFB Engert et al. 2022 CC-BY_4.0 FBrf0253662 144 144 0 5 0
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Engert2022 pdb EM FAFB Engert et al. 2022 CC-BY_4.0 FBrf0253662 144 131 0 5 0
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Erginkaya2025 dev EM FAFB Erginkaya et al 2025 CC-BY-SA_4.0 doi_10_1038_s41593_025_01948_9 91 40 2 35 0
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Erginkaya2025 pdb EM FAFB Erginkaya et al 2025 CC-BY-SA_4.0 doi_10_1038_s41593_025_01948_9 91 0 0 35 0
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Eschbach2020 dev EM L1 Eschbach et al 2020 CC-BY-SA_4.0 FBrf0245294 204 179 0 108 0
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Eschbach2020 pdb EM L1 Eschbach et al 2020 CC-BY-SA_4.0 FBrf0245294 204 0 0 108 0
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Eschbach2020b dev EM L1 Eschbach et al 2020b CC-BY_4.0 doi_10_1101_2020_04_23_058339 654 580 0 95 0
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Eschbach2020b pdb EM L1 Eschbach et al 2020b CC-BY_4.0 doi_10_1101_2020_04_23_058339 654 0 0 95 0
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FafbDolan2019 dev EM FAFB Dolan et al. 2019 CC-BY-SA_4.0 FBrf0242477 113 113 104 86 0
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FafbDolan2019 pdb EM FAFB Dolan et al. 2019 CC-BY-SA_4.0 FBrf0242477 113 69 65 86 0
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Felsenberg2018 dev EM FAFB Felsenberg et al. 2018 CC-BY-SA_4.0 FBrf0240371 3 3 3 3 0
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Felsenberg2018 pdb EM FAFB Felsenberg et al. 2018 CC-BY-SA_4.0 FBrf0240371 3 0 0 3 0
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Fushiki2016 dev Larval peristaltic locomotor system neurons - EM (Fushiki2016) CC-BY-SA_4.0 FBrf0231611 82 73 0 36 0
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Fushiki2016 pdb Larval peristaltic locomotor system neurons - EM (Fushiki2016) CC-BY-SA_4.0 FBrf0231611 82 0 0 36 0
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Gerhard2017 dev Nociceptive circuit neurons - EM (Gerhard2017) CC-BY-SA_4.0 FBrf0237057 55 51 0 27 0
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Gerhard2017 pdb Nociceptive circuit neurons - EM (Gerhard2017) CC-BY-SA_4.0 FBrf0237057 55 0 0 27 0
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Gorko2024 dev EM FAFB Gorko et al 2024 CC-BY-SA_4.0 FBrf0251280 2 2 2 2 0
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Gorko2024 pdb EM FAFB Gorko et al 2024 CC-BY-SA_4.0 FBrf0251280 2 0 0 2 0
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HampelEichler2020 dev EM FAFB Hampel and Eichler et al 2020 CC-BY_4.0 FBrf0247223 147 147 28 18 0
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HampelEichler2020 pdb EM FAFB Hampel and Eichler et al 2020 CC-BY_4.0 FBrf0247223 147 0 0 18 0
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Heckscher2015 dev Eve+ neurons, sensorimotor circuit - EM (Heckscher2015) CC-BY-SA_4.0 FBrf0229965 134 118 0 54 0
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Heckscher2015 pdb Eve+ neurons, sensorimotor circuit - EM (Heckscher2015) CC-BY-SA_4.0 FBrf0229965 134 0 0 54 0
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Hueckesfeld2020 dev Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila (Hueckesfeld et al. 2020) CC-BY-SA_4.0 FBrf0249161 878 854 0 113 0
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Hueckesfeld2020 pdb Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila (Hueckesfeld et al. 2020) CC-BY-SA_4.0 FBrf0249161 878 0 0 113 0
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Imambocus2022 dev EM L1 Imambocus et al., 2022 CC-BY_4.0 FBrf0252313 176 169 0 55 0
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Imambocus2022 pdb EM L1 Imambocus et al., 2022 CC-BY_4.0 FBrf0252313 176 0 0 55 0
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Jovanic2016 dev larval sensorimotor decision pathways (Jovanic2016) CC-BY-SA_4.0 FBrf0233796 44 44 0 25 0
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Jovanic2016 pdb larval sensorimotor decision pathways (Jovanic2016) CC-BY-SA_4.0 FBrf0233796 44 0 0 25 0
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Jovanic2019 dev EM L1 Jovanic et al. 2019 CC-BY-SA_4.0 FBrf0241547 37 36 0 18 0
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Jovanic2019 pdb EM L1 Jovanic et al. 2019 CC-BY-SA_4.0 FBrf0241547 37 0 0 18 0
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Kim2020 dev EM FAFB Kim et al 2020 CC-BY-SA_4.0 doi_10_1002_cne_24877 95 95 0 8 0
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Kim2020 pdb EM FAFB Kim et al 2020 CC-BY-SA_4.0 doi_10_1002_cne_24877 95 87 0 8 0
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Kind2021 dev EM FAFB Kind et al. 2021 CC-BY_4.0 FBrf0252485 286 285 5 41 0
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Kind2021 pdb EM FAFB Kind et al. 2021 CC-BY_4.0 FBrf0252485 286 0 0 41 0
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Larderet2017 dev larval visual circuit neurons (Larderet2017) CC-BY-SA_4.0 FBrf0237760 72 71 0 12 0
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Larderet2017 pdb larval visual circuit neurons (Larderet2017) CC-BY-SA_4.0 FBrf0237760 72 0 0 12 0
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Maniates_Selvin2020 dev EM FANC Phelps et al 2020 CC-BY-SA_4.0 FBrf0247998 2029 2017 0 34 0
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Maniates_Selvin2020 pdb EM FANC Phelps et al 2020 CC-BY-SA_4.0 FBrf0247998 2029 0 0 34 0
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Marin2020 dev EM FAFB Marin et al 2020 CC-BY-SA_4.0 doi_10_1016_j_cub_2020_06_028 327 327 91 93 0
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Marin2020 pdb EM FAFB Marin et al 2020 CC-BY-SA_4.0 doi_10_1016_j_cub_2020_06_028 327 91 24 93 0
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Mark2019 dev EM L1 Mark et al. 2019 CC-BY-SA_4.0 doi_10_1101_617936 78 73 0 63 0
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Mark2019 pdb EM L1 Mark et al. 2019 CC-BY-SA_4.0 doi_10_1101_617936 78 0 0 63 0
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Miroschnikow2018 dev EM L1 Miroschnikow et al. 2018 CC-BY_4.0 FBrf0240975 739 664 0 79 0
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Miroschnikow2018 pdb EM L1 Miroschnikow et al. 2018 CC-BY_4.0 FBrf0240975 739 0 0 79 0
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Morimoto2020 dev EM FAFB Morimoto et al 2020 CC-BY_4.0 FBrf0247630 76 76 66 4 0
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Morimoto2020 pdb EM FAFB Morimoto et al 2020 CC-BY_4.0 FBrf0247630 76 0 0 4 0
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Ohyama2015 dev Neurons involved in larval fast escape response - EM (Ohyama2016) CC-BY-SA_4.0 FBrf0228257 109 103 0 57 0
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Ohyama2015 pdb Neurons involved in larval fast escape response - EM (Ohyama2016) CC-BY-SA_4.0 FBrf0228257 109 0 0 57 0
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Otto2020 dev EM FAFB Otto et al 2020 CC-BY_4.0 FBrf0246510 807 805 395 79 0
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Otto2020 pdb EM FAFB Otto et al 2020 CC-BY_4.0 FBrf0246510 807 12 12 79 0
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Sayin2019 dev EM FAFB Sayin et al 2019 CC-BY-SA_4.0 FBrf0243986 3 3 3 3 0
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Sayin2019 pdb EM FAFB Sayin et al 2019 CC-BY-SA_4.0 FBrf0243986 3 0 0 3 0
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Schlegel2016 dev larval hugin neurons - EM (Schlegel2016) CC-BY_4.0 FBrf0234450 193 182 0 40 0
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Schlegel2016 pdb larval hugin neurons - EM (Schlegel2016) CC-BY_4.0 FBrf0234450 193 0 0 40 0
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Shiu2022 dev EM FAFB Shiu et al. 2022 CC-BY_4.0 FBrf0254006 25 24 0 23 0
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Shiu2022 pdb EM FAFB Shiu et al. 2022 CC-BY_4.0 FBrf0254006 25 11 0 23 0
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SplitMeissner2024 dev Split-GAL4 lines from Meissner et al., 2024 CC-BY_4.0 doi_10_1101_2024_01_09_574419 381 194 0 191 0
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SplitMeissner2024 pdb Split-GAL4 lines from Meissner et al., 2024 CC-BY_4.0 doi_10_1101_2024_01_09_574419 381 0 0 191 0
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SplitWang2020a dev Split-GAL4 lines from Wang et al., 2020a CC-BY_4.0 FBrf0245074 49 0 19 10 0
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SplitWang2020a pdb Split-GAL4 lines from Wang et al., 2020a CC-BY_4.0 FBrf0245074 49 0 17 10 0
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TaiszGalili2022 dev EM FAFB Taisz and Galili et al., 2022 CC-BY-SA_4.0 doi_10_1101_2022_05_13_491877v3 90 90 15 22 0
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TaiszGalili2022 dev EM FAFB Taisz and Galili et al., 2022 CC-BY-SA_4.0 FBrf0256726 90 90 15 22 0
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TaiszGalili2022 pdb EM FAFB Taisz and Galili et al., 2022 CC-BY-SA_4.0 FBrf0256726 90 48 9 22 0
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TaiszGalili2022 pdb EM FAFB Taisz and Galili et al., 2022 CC-BY-SA_4.0 doi_10_1101_2022_05_13_491877v3 90 48 9 22 0
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Takagi2017 dev Larval wave neurons and circuit partners - EM (Takagi2017) CC-BY-SA_4.0 FBrf0237618 38 38 0 15 0
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Takagi2017 pdb Larval wave neurons and circuit partners - EM (Takagi2017) CC-BY-SA_4.0 FBrf0237618 38 0 0 15 0
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Takemura2023 dev Male Adult Nerve Cord (MANC) connectome neurons CC-BY_4.0 doi_10_1101_2023_06_05_543757 23759 23722 0 4064 0
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Takemura2023 pdb Male Adult Nerve Cord (MANC) connectome neurons CC-BY_4.0 doi_10_1101_2023_06_05_543757 23759 0 0 4064 0
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Tastekin2018 dev EM L1 Tastekin et al 2018 CC-BY-SA_4.0 FBrf0240828 10 9 0 5 0
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Tastekin2018 pdb EM L1 Tastekin et al 2018 CC-BY-SA_4.0 FBrf0240828 10 0 0 5 0
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Turner_Evans2020 dev EM FAFB Turner-Evans et al 2020 CC-BY_4.0 doi_10_1016_j_neuron_2020_08_006 49 49 36 17 0
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Turner_Evans2020 pdb EM FAFB Turner-Evans et al 2020 CC-BY_4.0 doi_10_1016_j_neuron_2020_08_006 49 0 0 17 0
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Valdes_Aleman2021 dev Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila (Valdes-Aleman et al. 2021) CC-BY-SA_4.0 FBrf0247750 37 37 0 20 0
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Valdes_Aleman2021 pdb Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila (Valdes-Aleman et al. 2021) CC-BY-SA_4.0 FBrf0247750 37 0 0 20 0
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Wang2020a dev EM FAFB Wang et al 2020a CC-BY_4.0 FBrf0245074 12 12 10 10 0
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Wang2020a pdb EM FAFB Wang et al 2020a CC-BY_4.0 FBrf0245074 12 0 0 10 0
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Wang2020b dev EM FAFB Wang et al 2020b CC-BY_4.0 FBrf0246914 1 1 0 1 0
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Wang2020b pdb EM FAFB Wang et al 2020b CC-BY_4.0 FBrf0246914 1 0 0 1 0
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Wang2020c dev EM FAFB Wang et al 2020c CC-BY-SA_4.0 FBrf0247919 24 24 7 9 0
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Wang2020c pdb EM FAFB Wang et al 2020c CC-BY-SA_4.0 FBrf0247919 24 0 0 9 0
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WindingPedigo2023 dev EM L1 Winding, Pedigo et al., 2023 CC-BY_4.0 FBrf0255988 3066 2812 0 330 0
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WindingPedigo2023 pdb EM L1 Winding, Pedigo et al., 2023 CC-BY_4.0 FBrf0255988 3066 0 0 330 0
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Xu2020NeuronsV1point2point1 dev JRC_FlyEM_Hemibrain neurons Version 1.2.1 CC-BY_4.0 doi_10_1101_2020_01_21_911859 22705 22432 10542 5049 0
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Xu2020NeuronsV1point2point1 pdb JRC_FlyEM_Hemibrain neurons Version 1.2.1 CC-BY_4.0 doi_10_1101_2020_01_21_911859 22705 22432 10532 5049 0
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Zarin2019 dev EM L1 Zarin, Mark et al. 2019 CC-BY-SA_4.0 doi_10_1101_617977 194 175 0 87 0
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Zarin2019 pdb EM L1 Zarin, Mark et al. 2019 CC-BY-SA_4.0 doi_10_1101_617977 194 0 0 87 0
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Zhao2023 dev EM FAFB Zhao et al., 2023 CC-BY_4.0 doi_10_1101_2022_12_14_520178 1194 614 1 7 0
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Zhao2023 pdb EM FAFB Zhao et al., 2023 CC-BY_4.0 doi_10_1101_2022_12_14_520178 1194 0 0 7 0
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Zheng2018 dev EM FAFB Zheng et al 2018 CC-BY-SA_4.0 FBrf0239557 145 145 100 71 0
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Zheng2018 pdb EM FAFB Zheng et al 2018 CC-BY-SA_4.0 FBrf0239557 145 114 81 71 0
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Zheng2020 dev EM FAFB Zheng et al 2020 (published 2022) CC-BY-SA_4.0 FBrf0254218 1507 1507 728 11 0
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Zheng2020 pdb EM FAFB Zheng et al 2020 (published 2022) CC-BY-SA_4.0 FBrf0254218 1507 23 16 11 0
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Zwart2016 dev Larval motor circuit neurons (Zwart2016) CC-BY-SA_4.0 FBrf0233076 41 36 0 19 0
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Zwart2016 pdb Larval motor circuit neurons (Zwart2016) CC-BY-SA_4.0 FBrf0233076 41 0 0 19 0

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