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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-01-31 03:59:54 UTC
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**Git Commit:** 043432cd0d0df7460d56ef178b2bf5706406bbf2
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**Test Date:** 2026-02-01 04:24:48 UTC
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**Git Commit:** 1ef6b6bda93c95929199c9ab857ff9d6e6d453af
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**Branch:** main
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**Workflow Run:** [21538350922](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21538350922)
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**Workflow Run:** [21556536331](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21556536331)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 46.243s
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Ran 15 tests in 63.931s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 1.6878s
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get_term_info (individual): 1.8640s
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get_term_info (mushroom body): 2.7378s
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get_term_info (individual): 2.2619s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.3429s
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NeuronsPartHere: 2.6182s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 1.7092s
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NeuronsPresynapticHere: 1.4294s
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NeuronsPostsynapticHere: 1.6111s
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NeuronNeuronConnectivity: 1.5235s
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NeuronsSynaptic: 2.8887s
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NeuronsPresynapticHere: 2.0126s
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NeuronsPostsynapticHere: 2.5836s
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NeuronNeuronConnectivity: 1.8996s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.4922s
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PartsOf: 1.6428s
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SubclassesOf: 1.3903s
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ComponentsOf: 2.1105s
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PartsOf: 1.9956s
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SubclassesOf: 1.9367s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.4016s
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TractsNervesInnervatingHere: 1.4101s
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LineageClonesIn: 1.3924s
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NeuronClassesFasciculatingHere: 1.9184s
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TractsNervesInnervatingHere: 1.9347s
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LineageClonesIn: 1.9365s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 1.3899s
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ImagesThatDevelopFrom: 1.3877s
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epFrag: 1.4144s
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ImagesNeurons: 1.9323s
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ImagesThatDevelopFrom: 1.9231s
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epFrag: 1.9498s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.3810s
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ListAllAvailableImages: 1.9583s
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================================================================================
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CONNECTIVITY QUERIES
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NeuronNeuronConnectivityQuery: 1.4262s
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NeuronRegionConnectivityQuery: 1.3986s
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NeuronNeuronConnectivityQuery: 1.9369s
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NeuronRegionConnectivityQuery: 1.9001s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.7258s
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SimilarMorphologyTo: 1.0380s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 3.3057s
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NeuronInputsTo: 4.1270s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 1.5043s
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ExpressionOverlapsHere: 1.1138s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.7102s
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anatScRNAseqQuery: 0.9662s
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└─ Found 0 total clusters
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clusterExpression: 0.5701s
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clusterExpression: 0.9946s
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└─ Found 0 genes expressed
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expressionCluster: 0.6993s
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expressionCluster: 0.9178s
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└─ Found 0 clusters expressing gene
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scRNAdatasetData: 0.6690s
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scRNAdatasetData: 0.8024s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.0636s
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SimilarMorphologyTo: 2.4920s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.5578s
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SimilarMorphologyToPartOf: 1.0877s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.5376s
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SimilarMorphologyToPartOfexp: 0.8903s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.5490s
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SimilarMorphologyToNB: 1.6587s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.6638s
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SimilarMorphologyToNBexp: 0.8186s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.5745s
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PaintedDomains: 0.7671s
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└─ Found 0 painted domains
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DatasetImages: 0.6564s
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DatasetImages: 0.9686s
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└─ Found 0 images in dataset
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AllAlignedImages: 0.5547s
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AllAlignedImages: 0.7668s
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└─ Found 0 aligned images
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AlignedDatasets: 0.7436s
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AlignedDatasets: 1.0256s
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└─ Found 0 aligned datasets
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AllDatasets: 1.0411s
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AllDatasets: 0.9811s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.5215s
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TermsForPub: 0.7083s
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└─ Found 0 terms for publication
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TransgeneExpressionHere: 1.2973s
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TransgeneExpressionHere: 1.3673s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 2.822s
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Ran 1 test in 3.904s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.4154 seconds
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VFB_00101567 query took: 1.4065 seconds
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Total time for both queries: 2.8219 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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FBbt_00003748 query took: 1.9227 seconds
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VFB_00101567 query took: 1.9810 seconds
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Total time for both queries: 3.9037 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-01-31 03:59:54 UTC*
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*Last updated: 2026-02-01 04:24:48 UTC*

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