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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-02-04 11:58:25 UTC
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**Git Commit:** 1267c75c5830dbfac7023dd43a3ecf2dfa87a164
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**Test Date:** 2026-02-04 12:11:38 UTC
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**Git Commit:** 9714b0c1e701bece54db52f4ac883e9ddfb15f06
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**Branch:** main
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**Workflow Run:** [21670491359](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21670491359)
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**Workflow Run:** [21670882747](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21670882747)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 86.378s
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Ran 15 tests in 89.766s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.5659s
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get_term_info (individual): 1.9124s
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get_term_info (mushroom body): 11.2986s
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get_term_info (individual): 2.1192s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.0117s
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NeuronsPartHere: 2.5460s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.1341s
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NeuronsPresynapticHere: 1.7061s
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NeuronsPostsynapticHere: 1.9262s
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NeuronNeuronConnectivity: 1.6519s
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NeuronsSynaptic: 2.3968s
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NeuronsPresynapticHere: 1.9860s
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NeuronsPostsynapticHere: 2.2668s
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NeuronNeuronConnectivity: 1.9018s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.6847s
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PartsOf: 1.6705s
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SubclassesOf: 1.6431s
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ComponentsOf: 2.0072s
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PartsOf: 1.9179s
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SubclassesOf: 1.9834s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.6730s
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TractsNervesInnervatingHere: 1.6720s
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LineageClonesIn: 1.6702s
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NeuronClassesFasciculatingHere: 1.9966s
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TractsNervesInnervatingHere: 1.9485s
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LineageClonesIn: 1.9376s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 2.8032s
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ImagesThatDevelopFrom: 1.7053s
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epFrag: 1.6596s
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ImagesNeurons: 3.2167s
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ImagesThatDevelopFrom: 2.0629s
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epFrag: 1.9316s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.6743s
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ListAllAvailableImages: 1.9148s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 1.6558s
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NeuronRegionConnectivityQuery: 1.6599s
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NeuronNeuronConnectivityQuery: 2.0339s
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NeuronRegionConnectivityQuery: 1.9277s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.9951s
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SimilarMorphologyTo: 1.0279s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 2.7952s
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NeuronInputsTo: 4.8867s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 1.2041s
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ExpressionOverlapsHere: 1.3630s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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anatScRNAseqQuery: 0.8862s
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└─ Found 0 total clusters
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clusterExpression: 18.4236s
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anatScRNAseqQuery: 0.9584s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 1.3512s
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└─ Found 4589 genes expressed, returned 10
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clusterExpression: Skipped (test data may not exist): 18.423635721206665 not less than 15.0 : clusterExpression exceeded threshold
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expressionCluster: 0.7717s ✅
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expressionCluster: 0.9333s ✅
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 0.7665s
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scRNAdatasetData: 0.7557s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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================================================================================
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SimilarMorphologyTo: 0.9019s
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SimilarMorphologyTo: 1.3318s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.6676s
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SimilarMorphologyToPartOf: 0.8885s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.7631s
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SimilarMorphologyToPartOfexp: 0.7457s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.6455s
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SimilarMorphologyToNB: 1.0226s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.6649s
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SimilarMorphologyToNBexp: 0.8963s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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================================================================================
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PaintedDomains: 0.8359s
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PaintedDomains: 0.9757s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.6517s
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DatasetImages: 0.7642s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 2.3379s
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AllAlignedImages: 2.1565s
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└─ Found 378914 aligned images, returned 10
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AlignedDatasets: 0.8324s
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AlignedDatasets: 0.9833s
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└─ Found 72 aligned datasets, returned 10
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AllDatasets: 0.8356s
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AllDatasets: 0.9958s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.8284s
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TermsForPub: 0.9746s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 1.5253s
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TransgeneExpressionHere: 1.8822s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 3.397s
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Ran 1 test in 3.965s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.6751 seconds
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VFB_00101567 query took: 1.7213 seconds
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Total time for both queries: 3.3964 seconds
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FBbt_00003748 query took: 1.9771 seconds
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VFB_00101567 query took: 1.9871 seconds
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Total time for both queries: 3.9642 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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==================================================
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Performance test completed successfully!
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-02-04 11:58:25 UTC*
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*Last updated: 2026-02-04 12:11:38 UTC*

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