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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-02-05 04:09:24 UTC
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**Git Commit:** 37b73cbfcf72a920f6c2bad28ba54de1c5d153fb
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**Test Date:** 2026-02-06 04:15:20 UTC
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**Git Commit:** ab50f0915db6ec1278fe120ed9fb37706e7cba4a
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**Branch:** main
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**Workflow Run:** [21698349139](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21698349139)
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**Workflow Run:** [21738300539](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21738300539)
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## Test Overview
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@@ -120,12 +120,12 @@ FAIL: test_05_tract_lineage_queries (src.test.test_query_performance.QueryPerfor
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Test tract/nerve and lineage clone queries
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----------------------------------------------------------------------
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Traceback (most recent call last):
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 244, in test_05_tract_lineage_queries
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self.assertLess(duration, self.THRESHOLD_SLOW, "NeuronClassesFasciculatingHere exceeded threshold")
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AssertionError: 57.44334101676941 not less than 15.0 : NeuronClassesFasciculatingHere exceeded threshold
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 255, in test_05_tract_lineage_queries
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self.assertLess(duration, self.THRESHOLD_SLOW, "TractsNervesInnervatingHere exceeded threshold")
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AssertionError: 361.280663728714 not less than 15.0 : TractsNervesInnervatingHere exceeded threshold
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----------------------------------------------------------------------
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Ran 15 tests in 120.788s
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Ran 15 tests in 445.253s
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FAILED (failures=1)
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.1631s
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get_term_info (individual): 1.6899s
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get_term_info (mushroom body): 2.5470s
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get_term_info (individual): 2.2512s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 1.8147s
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NeuronsPartHere: 2.7604s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 1.6498s
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NeuronsPresynapticHere: 1.5017s
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NeuronsPostsynapticHere: 1.7996s
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NeuronNeuronConnectivity: 1.2582s
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NeuronsSynaptic: 2.5811s
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NeuronsPresynapticHere: 2.2855s
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NeuronsPostsynapticHere: 2.3422s
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NeuronNeuronConnectivity: 1.9255s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.2483s
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PartsOf: 1.7406s
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SubclassesOf: 1.4985s
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ComponentsOf: 1.9194s
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PartsOf: 1.9069s
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SubclassesOf: 1.9198s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 57.4433s ✅
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NeuronClassesFasciculatingHere: 1.9146s ✅
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TractsNervesInnervatingHere: 361.2807s ✅
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 2.2938s
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ImagesThatDevelopFrom: 1.2136s
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epFrag: 1.1759s
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ImagesNeurons: 3.8383s
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ImagesThatDevelopFrom: 2.4157s
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epFrag: 2.1713s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.1880s
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ListAllAvailableImages: 2.3700s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 1.1644s
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NeuronRegionConnectivityQuery: 1.1706s
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NeuronNeuronConnectivityQuery: 1.9736s
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NeuronRegionConnectivityQuery: 1.9282s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.7253s
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SimilarMorphologyTo: 0.9999s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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================================================================================
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NeuronInputsTo: 3.3694s
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NeuronInputsTo: 3.2735s
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 0.9043s
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ExpressionOverlapsHere: 1.4178s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.5990s
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anatScRNAseqQuery: 1.0380s
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└─ Found 57 total clusters, returned 10
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clusterExpression: 4.3296s
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clusterExpression: 5.8727s
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└─ Found 4589 genes expressed, returned 10
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expressionCluster: 0.5294s
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expressionCluster: 0.8734s
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└─ Found 9 clusters expressing gene
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scRNAdatasetData: 0.7109s
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scRNAdatasetData: 1.0892s
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└─ Found 13 clusters in dataset, returned 10
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 0.7780s
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SimilarMorphologyTo: 1.1924s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.7032s
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SimilarMorphologyToPartOf: 0.7706s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.6556s
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SimilarMorphologyToPartOfexp: 0.7540s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.5658s
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SimilarMorphologyToNB: 0.7539s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.5027s
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SimilarMorphologyToNBexp: 0.7581s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.5877s
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PaintedDomains: 0.9674s
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└─ Found 46 painted domains, returned 10
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DatasetImages: 0.5537s
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DatasetImages: 0.9451s
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└─ Found 46 images in dataset, returned 10
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AllAlignedImages: 1.9393s
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AllAlignedImages: 2.1269s
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└─ Found 378914 aligned images, returned 10
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AlignedDatasets: 0.5815s
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AlignedDatasets: 0.9850s
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└─ Found 72 aligned datasets, returned 10
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AllDatasets: 0.8524s
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AllDatasets: 1.0246s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.5883s
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TermsForPub: 1.0022s
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└─ Found 2 terms for publication
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TransgeneExpressionHere: 1.7715s
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TransgeneExpressionHere: 2.0784s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 2.376s
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Ran 1 test in 3.925s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.1906 seconds
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VFB_00101567 query took: 1.1853 seconds
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Total time for both queries: 2.3759 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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FBbt_00003748 query took: 1.9776 seconds
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VFB_00101567 query took: 1.9475 seconds
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Total time for both queries: 3.9250 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-02-05 04:09:24 UTC*
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*Last updated: 2026-02-06 04:15:20 UTC*

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