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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-01-24 03:22:13 UTC
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**Git Commit:** 089f357123d1306dbfd737a805e0d9bb855b8fb6
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**Test Date:** 2026-01-25 03:48:25 UTC
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**Git Commit:** b3ca918d1b9c16d5a63f4fe88c73c80af714baa2
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**Branch:** main
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**Workflow Run:** [21308320128](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21308320128)
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**Workflow Run:** [21326394468](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21326394468)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 43.703s
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Ran 15 tests in 57.888s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.0455s
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get_term_info (individual): 1.6909s
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get_term_info (mushroom body): 2.9217s
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get_term_info (individual): 1.7983s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.3392s
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NeuronsPartHere: 2.4771s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 1.4848s
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NeuronsPresynapticHere: 1.4978s
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NeuronsPostsynapticHere: 2.2355s
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NeuronNeuronConnectivity: 1.2053s
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NeuronsSynaptic: 2.6545s
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NeuronsPresynapticHere: 1.9972s
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NeuronsPostsynapticHere: 2.0944s
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NeuronNeuronConnectivity: 2.2817s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.3008s
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PartsOf: 1.7069s
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SubclassesOf: 1.4149s
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ComponentsOf: 1.8379s
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PartsOf: 1.8153s
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SubclassesOf: 1.7819s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.3690s
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TractsNervesInnervatingHere: 1.2171s
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LineageClonesIn: 1.2046s
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NeuronClassesFasciculatingHere: 1.8239s
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TractsNervesInnervatingHere: 1.8205s
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LineageClonesIn: 1.8345s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 1.2955s
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ImagesThatDevelopFrom: 1.1928s
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epFrag: 1.3050s
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ImagesNeurons: 1.7915s
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ImagesThatDevelopFrom: 1.7914s
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epFrag: 1.7849s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.2201s
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ListAllAvailableImages: 1.8497s
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================================================================================
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CONNECTIVITY QUERIES
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NeuronNeuronConnectivityQuery: 1.2212s
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NeuronRegionConnectivityQuery: 1.2080s
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NeuronNeuronConnectivityQuery: 1.8219s
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NeuronRegionConnectivityQuery: 1.7901s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.7019s
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SimilarMorphologyTo: 0.9408s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 3.2772s
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NeuronInputsTo: 3.4579s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 0.8308s
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ExpressionOverlapsHere: 2.1842s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.7151s
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anatScRNAseqQuery: 1.0196s
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└─ Found 0 total clusters
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clusterExpression: 0.6243s
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clusterExpression: 0.8532s
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└─ Found 0 genes expressed
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expressionCluster: 0.6150s
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expressionCluster: 0.7321s
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└─ Found 0 clusters expressing gene
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scRNAdatasetData: 0.5950s
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scRNAdatasetData: 0.7930s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.0238s
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SimilarMorphologyTo: 1.0657s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.5726s
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SimilarMorphologyToPartOf: 0.7102s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.6611s
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SimilarMorphologyToPartOfexp: 0.8134s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.5080s
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SimilarMorphologyToNB: 0.7032s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.6790s
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SimilarMorphologyToNBexp: 0.8330s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.6556s
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PaintedDomains: 0.7165s
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└─ Found 0 painted domains
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DatasetImages: 0.5101s
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DatasetImages: 0.7739s
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└─ Found 0 images in dataset
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AllAlignedImages: 0.7143s
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AllAlignedImages: 0.6597s
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└─ Found 0 aligned images
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AlignedDatasets: 0.7983s
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AlignedDatasets: 0.8703s
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└─ Found 0 aligned datasets
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AllDatasets: 0.7857s
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AllDatasets: 0.9240s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.5440s
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TermsForPub: 0.6712s
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└─ Found 0 terms for publication
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TransgeneExpressionHere: 0.7340s
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TransgeneExpressionHere: 1.1943s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 2.466s
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Ran 1 test in 3.671s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.2337 seconds
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VFB_00101567 query took: 1.2324 seconds
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Total time for both queries: 2.4662 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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FBbt_00003748 query took: 1.8455 seconds
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VFB_00101567 query took: 1.8249 seconds
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Total time for both queries: 3.6704 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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==================================================
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Performance test completed successfully!
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```
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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---
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*Last updated: 2026-01-24 03:22:13 UTC*
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*Last updated: 2026-01-25 03:48:25 UTC*

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