Update performance test results [skip ci]

Author: actions-user

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-02-02 18:35:30 UTC
-**Git Commit:** 60c4054acb7286908d9cb8840b3ad8fb026d8851
+**Test Date:** 2026-02-03 04:09:44 UTC
+**Git Commit:** 8906834a5787f2d593938416041fcc3397ef18b2
 **Branch:** main
-**Workflow Run:** [21602545419](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21602545419)
+**Workflow Run:** [21616566648](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21616566648)
 
 ## Test Overview
 
@@ -95,7 +95,8 @@ Test anatomical hierarchy queries ... ok
 test_05_tract_lineage_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test tract/nerve and lineage clone queries ... ok
 test_05b_image_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test image and developmental lineage queries ... FAIL
+Test image and developmental lineage queries ... INFO: Owlery query returned 400 Bad Request (invalid for this term type): <http://purl.obolibrary.org/obo/BFO_0000050> some <http://purl.obolibrary.org/obo/FBtp0000001>
+ok
 test_06_instance_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test instance retrieval queries ... ok
 test_07_connectivity_queries (src.test.test_query_performance.QueryPerformanceTest)
@@ -115,19 +116,10 @@ Test dataset and template queries ... ok
 test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test publication and transgene queries ... ok
 
-======================================================================
-FAIL: test_05b_image_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test image and developmental lineage queries
 ----------------------------------------------------------------------
-Traceback (most recent call last):
-  File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 284, in test_05b_image_queries
-    self.assertLess(duration, self.THRESHOLD_SLOW, "ImagesNeurons exceeded threshold")
-AssertionError: 35.765986919403076 not less than 15.0 : ImagesNeurons exceeded threshold
+Ran 15 tests in 76.376s
 
-----------------------------------------------------------------------
-Ran 15 tests in 83.217s
-
-FAILED (failures=1)
+OK
 VFBquery functions patched with caching support
 VFBquery: SOLR caching enabled by default (3-month TTL)
          Disable with: export VFBQUERY_CACHE_ENABLED=false
@@ -137,116 +129,120 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 2.1200s ✅
-get_term_info (individual): 1.5530s ✅
+get_term_info (mushroom body): 2.5632s ✅
+get_term_info (individual): 2.8165s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.5589s ✅
+NeuronsPartHere: 2.4637s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 2.0732s ✅
-NeuronsPresynapticHere: 1.2742s ✅
-NeuronsPostsynapticHere: 1.7829s ✅
-NeuronNeuronConnectivity: 3.1229s ✅
+NeuronsSynaptic: 2.4481s ✅
+NeuronsPresynapticHere: 2.2445s ✅
+NeuronsPostsynapticHere: 2.3797s ✅
+NeuronNeuronConnectivity: 2.0033s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.3371s ✅
-PartsOf: 1.4569s ✅
-SubclassesOf: 1.4793s ✅
+ComponentsOf: 1.9015s ✅
+PartsOf: 1.8868s ✅
+SubclassesOf: 2.0236s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.3084s ✅
-TractsNervesInnervatingHere: 1.3509s ✅
-LineageClonesIn: 1.3383s ✅
+NeuronClassesFasciculatingHere: 1.8911s ✅
+TractsNervesInnervatingHere: 1.8983s ✅
+LineageClonesIn: 1.8984s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 35.7660s ✅
+ImagesNeurons: 3.2078s ✅
+ImagesThatDevelopFrom: 9.1684s ✅
+ERROR: Owlery instances request failed: 400 Client Error: Bad Request for url: http://owl.virtualflybrain.org/kbs/vfb/instances?object=%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_0000050%3E+some+%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBtp0000001%3E&direct=false&includeDeprecated=false
+       Test URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_0000050%3E+some+%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBtp0000001%3E&direct=false&includeDeprecated=false
+epFrag: 5.5367s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 2.1054s ✅
+ListAllAvailableImages: 1.9267s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.2560s ✅
-NeuronRegionConnectivityQuery: 1.5479s ✅
+NeuronNeuronConnectivityQuery: 1.9060s ✅
+NeuronRegionConnectivityQuery: 1.8756s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.7433s ✅
+SimilarMorphologyTo: 1.1075s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 4.4323s ✅
+NeuronInputsTo: 4.5545s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 0.8076s ✅
+ExpressionOverlapsHere: 2.1688s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 2.3144s ✅
+anatScRNAseqQuery: 1.0012s ✅
   └─ Found 0 total clusters
-clusterExpression: 0.7042s ✅
+clusterExpression: 1.0503s ✅
   └─ Found 0 genes expressed
-expressionCluster: 0.6249s ✅
+expressionCluster: 0.7539s ✅
   └─ Found 0 clusters expressing gene
-scRNAdatasetData: 0.6474s ✅
+scRNAdatasetData: 0.9218s ✅
   └─ Found 0 clusters in dataset
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 0.7777s ✅
+SimilarMorphologyTo: 2.6130s ✅
   └─ Found 215 NBLAST matches, returned 10
-SimilarMorphologyToPartOf: 0.5169s ✅
+SimilarMorphologyToPartOf: 0.8968s ✅
   └─ Found 0 NBLASTexp matches
-SimilarMorphologyToPartOfexp: 1.8347s ✅
+SimilarMorphologyToPartOfexp: 0.7322s ✅
   └─ Found 0 reverse NBLASTexp matches
-SimilarMorphologyToNB: 0.5399s ✅
+SimilarMorphologyToNB: 0.8312s ✅
   └─ Found 15 NeuronBridge matches, returned 10
-SimilarMorphologyToNBexp: 0.6754s ✅
+SimilarMorphologyToNBexp: 0.7315s ✅
   └─ Found 15 NeuronBridge expression matches, returned 10
 ✅ All NBLAST similarity queries completed
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.7101s ✅
+PaintedDomains: 0.7476s ✅
   └─ Found 0 painted domains
-DatasetImages: 0.5013s ✅
+DatasetImages: 0.9057s ✅
   └─ Found 0 images in dataset
-AllAlignedImages: 0.6046s ✅
+AllAlignedImages: 0.7199s ✅
   └─ Found 0 aligned images
-AlignedDatasets: 1.3742s ✅
+AlignedDatasets: 1.0457s ✅
   └─ Found 0 aligned datasets
-AllDatasets: 0.7931s ✅
+AllDatasets: 0.9588s ✅
   └─ Found 116 total datasets, returned 20
 ✅ All dataset/template queries completed
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.4879s ✅
+TermsForPub: 1.6021s ✅
   └─ Found 0 terms for publication
-TransgeneExpressionHere: 0.6897s ✅
+TransgeneExpressionHere: 0.9890s ✅
   └─ Found 2346 transgene expressions, returned 10
 ✅ All publication/transgene queries completed
 
@@ -259,7 +255,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 2.584s
+Ran 1 test in 4.165s
 
 OK
 VFBquery functions patched with caching support
@@ -269,10 +265,10 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.3311 seconds
-VFB_00101567 query took: 1.2528 seconds
-Total time for both queries: 2.5838 seconds
-Performance Level: 🟡 Good (1.5-3 seconds)
+FBbt_00003748 query took: 2.2582 seconds
+VFB_00101567 query took: 1.9065 seconds
+Total time for both queries: 4.1646 seconds
+Performance Level: 🟠 Acceptable (3-6 seconds)
 ==================================================
 Performance test completed successfully!
 ```
@@ -290,4 +286,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-02-02 18:35:30 UTC*
+*Last updated: 2026-02-03 04:09:44 UTC*