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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-01-27 03:42:38 UTC
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**Git Commit:** 75ee832d56cfb4dbde4204edb31ad6a56cdcad6d
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**Test Date:** 2026-01-27 15:17:20 UTC
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**Git Commit:** ac024f50e4d7bc98837fded86f06b1829e95b478
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**Branch:** main
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**Workflow Run:** [21383614252](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21383614252)
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**Workflow Run:** [21402713256](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21402713256)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 52.151s
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Ran 15 tests in 44.505s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.1927s
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get_term_info (individual): 1.7741s
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get_term_info (mushroom body): 1.9705s
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get_term_info (individual): 1.5969s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.0347s
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NeuronsPartHere: 2.2407s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 1.6380s
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NeuronsPresynapticHere: 2.0176s
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NeuronsPostsynapticHere: 1.4717s
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NeuronNeuronConnectivity: 1.7003s
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NeuronsSynaptic: 2.1020s
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NeuronsPresynapticHere: 1.6621s
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NeuronsPostsynapticHere: 1.6292s
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NeuronNeuronConnectivity: 1.3991s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.6906s
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PartsOf: 1.2343s
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SubclassesOf: 1.2002s
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ComponentsOf: 1.3804s
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PartsOf: 1.3842s
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SubclassesOf: 1.3935s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.2742s
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TractsNervesInnervatingHere: 1.5264s
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LineageClonesIn: 1.5172s
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NeuronClassesFasciculatingHere: 1.4913s
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TractsNervesInnervatingHere: 1.3762s
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LineageClonesIn: 1.3853s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 1.4555s
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ImagesThatDevelopFrom: 1.2029s
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epFrag: 1.4294s
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ImagesNeurons: 1.4017s
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ImagesThatDevelopFrom: 1.4257s
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epFrag: 1.3996s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.1994s
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ListAllAvailableImages: 1.4099s
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================================================================================
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CONNECTIVITY QUERIES
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NeuronNeuronConnectivityQuery: 1.2060s
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NeuronRegionConnectivityQuery: 1.2002s
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NeuronNeuronConnectivityQuery: 1.3852s
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NeuronRegionConnectivityQuery: 1.3962s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 0.7276s
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SimilarMorphologyTo: 0.8281s
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 3.9171s
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NeuronInputsTo: 3.0147s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 1.5109s
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ExpressionOverlapsHere: 0.8043s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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anatScRNAseqQuery: 0.7599s
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anatScRNAseqQuery: 0.6866s
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└─ Found 0 total clusters
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clusterExpression: 0.9423s
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clusterExpression: 0.7804s
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└─ Found 0 genes expressed
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expressionCluster: 0.6777s
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expressionCluster: 0.5621s
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└─ Found 0 clusters expressing gene
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scRNAdatasetData: 0.6072s
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scRNAdatasetData: 0.6824s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 5.4683s
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SimilarMorphologyTo: 0.7945s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.5749s
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SimilarMorphologyToPartOf: 0.5427s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.5619s
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SimilarMorphologyToPartOfexp: 0.5516s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.5911s
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SimilarMorphologyToNB: 0.5588s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.5159s
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SimilarMorphologyToNBexp: 0.7563s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.5146s
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PaintedDomains: 0.6636s
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└─ Found 0 painted domains
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DatasetImages: 0.6065s
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DatasetImages: 0.5743s
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└─ Found 0 images in dataset
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AllAlignedImages: 0.4953s
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AllAlignedImages: 0.5532s
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└─ Found 0 aligned images
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AlignedDatasets: 0.7910s
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AlignedDatasets: 0.7305s
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└─ Found 0 aligned datasets
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AllDatasets: 0.8272s
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AllDatasets: 0.8465s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.5467s
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TermsForPub: 0.5312s
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└─ Found 0 terms for publication
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TransgeneExpressionHere: 2.5460s
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TransgeneExpressionHere: 0.6100s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 2.462s
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Ran 1 test in 2.858s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.2453 seconds
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VFB_00101567 query took: 1.2162 seconds
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Total time for both queries: 2.4616 seconds
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FBbt_00003748 query took: 1.4502 seconds
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VFB_00101567 query took: 1.4078 seconds
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Total time for both queries: 2.8580 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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*Last updated: 2026-01-27 03:42:38 UTC*
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*Last updated: 2026-01-27 15:17:20 UTC*

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