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Update performance test results [skip ci]
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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2025-11-17 14:43:36 UTC
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**Git Commit:** a8b7281f0d28e1141eb4c7dcd98caa465a885691
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**Test Date:** 2025-11-17 15:03:03 UTC
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**Git Commit:** 3638c79aae579806ec1bc3f8e5698b5fda8a2182
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**Branch:** dev
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**Workflow Run:** [19433447992](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/19433447992)
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**Workflow Run:** [19434068394](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/19434068394)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 56.724s
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Ran 15 tests in 47.104s
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OK
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VFBquery caching enabled: TTL=2160h (90 days), Memory=2048MB
@@ -133,119 +133,119 @@ TERM INFO QUERIES
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DEBUG: Cache lookup for FBbt_00003748: MISS
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✅ Neo4j connection established
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✅ Neo4j connection established
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get_term_info (mushroom body): 4.6519s
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get_term_info (mushroom body): 3.8586s
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DEBUG: Cache lookup for VFB_00101567: MISS
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get_term_info (individual): 3.4954s
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get_term_info (individual): 2.4280s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 1.1509s
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NeuronsPartHere: 1.1175s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 1.2397s
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NeuronsPresynapticHere: 1.0550s
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NeuronsPostsynapticHere: 1.0434s
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NeuronNeuronConnectivity: 2.2013s
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NeuronsSynaptic: 1.2488s
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NeuronsPresynapticHere: 0.8196s
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NeuronsPostsynapticHere: 0.9611s
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NeuronNeuronConnectivity: 0.8493s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 0.9449s
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PartsOf: 0.9228s
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SubclassesOf: 1.0366s
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ComponentsOf: 0.8437s
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PartsOf: 0.8280s
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SubclassesOf: 0.8250s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 0.9301s
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TractsNervesInnervatingHere: 0.9174s
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LineageClonesIn: 0.9088s
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NeuronClassesFasciculatingHere: 0.8196s
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TractsNervesInnervatingHere: 0.8322s
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LineageClonesIn: 0.8089s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 1.5346s
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ImagesThatDevelopFrom: 0.9638s
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epFrag: 0.9350s
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ImagesNeurons: 1.2955s
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ImagesThatDevelopFrom: 0.8373s
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epFrag: 0.8384s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 0.9245s
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ListAllAvailableImages: 0.8244s
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================================================================================
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CONNECTIVITY QUERIES
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================================================================================
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NeuronNeuronConnectivityQuery: 0.9152s
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NeuronRegionConnectivityQuery: 0.9281s
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NeuronNeuronConnectivityQuery: 0.8346s
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NeuronRegionConnectivityQuery: 0.8415s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 11.1735s
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SimilarMorphologyTo: 10.3082s
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NEURON INPUT QUERIES (Neo4j)
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NeuronInputsTo: 3.2100s
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NeuronInputsTo: 2.7979s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 1.4845s
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ExpressionOverlapsHere: 0.7753s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.8474s
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anatScRNAseqQuery: 0.7331s
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└─ Found 0 total clusters
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clusterExpression: 0.7670s
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clusterExpression: 0.6986s
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└─ Found 0 genes expressed
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expressionCluster: 1.9591s
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expressionCluster: 0.6664s
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└─ Found 0 clusters expressing gene
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scRNAdatasetData: 0.9264s
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scRNAdatasetData: 0.6774s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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================================================================================
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SimilarMorphologyTo: 1.0384s
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SimilarMorphologyTo: 0.9129s
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└─ Found 227 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.7654s
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SimilarMorphologyToPartOf: 0.6736s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.7242s
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SimilarMorphologyToPartOfexp: 0.6483s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.7132s
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SimilarMorphologyToNB: 0.6422s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.6982s
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SimilarMorphologyToNBexp: 0.6751s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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PaintedDomains: 0.7486s
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PaintedDomains: 0.6959s
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└─ Found 0 painted domains
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DatasetImages: 0.7412s
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DatasetImages: 0.6710s
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└─ Found 0 images in dataset
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AllAlignedImages: 0.7664s
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AllAlignedImages: 0.6504s
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└─ Found 0 aligned images
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AlignedDatasets: 0.9794s
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AlignedDatasets: 0.9015s
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└─ Found 0 aligned datasets
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AllDatasets: 0.9910s
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AllDatasets: 0.9170s
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└─ Found 115 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.6799s
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TermsForPub: 0.6267s
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└─ Found 0 terms for publication
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TransgeneExpressionHere: 0.8066s
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TransgeneExpressionHere: 0.7155s
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└─ Found 2339 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 1.890s
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Ran 1 test in 1.661s
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OK
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VFBquery caching enabled: TTL=2160h (90 days), Memory=2048MB
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 0.9399 seconds
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VFB_00101567 query took: 0.9499 seconds
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Total time for both queries: 1.8898 seconds
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FBbt_00003748 query took: 0.8333 seconds
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VFB_00101567 query took: 0.8270 seconds
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Total time for both queries: 1.6603 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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---
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*Last updated: 2025-11-17 14:43:36 UTC*
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*Last updated: 2025-11-17 15:03:03 UTC*

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