Merge branch 'main' of https://github.com/VirtualFlyBrain/VFBquery

Author: Robbie1977

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-02-04 12:22:27 UTC
-**Git Commit:** 06559a9a79d43130afd523ed39c2ea63e717bb96
+**Test Date:** 2026-02-04 19:15:54 UTC
+**Git Commit:** 347e3fbfa03a171d6eaad83a94bee4e6e0ca4974
 **Branch:** main
-**Workflow Run:** [21671211466](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21671211466)
+**Workflow Run:** [21684839278](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21684839278)
 
 ## Test Overview
 
@@ -111,14 +111,23 @@ Test scRNAseq transcriptomics queries ... ok
 test_12_nblast_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test NBLAST similarity queries ... ok
 test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test dataset and template queries ... ok
+Test dataset and template queries ... FAIL
 test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test publication and transgene queries ... ok
 
+======================================================================
+FAIL: test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
+Test dataset and template queries
 ----------------------------------------------------------------------
-Ran 15 tests in 75.656s
+Traceback (most recent call last):
+  File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 660, in test_13_dataset_template_queries
+    self.assertLess(duration, self.THRESHOLD_MEDIUM, "AllAlignedImages exceeded threshold")
+AssertionError: 5.788266658782959 not less than 3.0 : AllAlignedImages exceeded threshold
 
-OK
+----------------------------------------------------------------------
+Ran 15 tests in 129.071s
+
+FAILED (failures=1)
 VFBquery functions patched with caching support
 VFBquery: SOLR caching enabled by default (3-month TTL)
          Disable with: export VFBQUERY_CACHE_ENABLED=false
@@ -128,118 +137,114 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 3.0154s ✅
-get_term_info (individual): 2.3973s ✅
+get_term_info (mushroom body): 2.7922s ✅
+get_term_info (individual): 2.4823s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.1980s ✅
+NeuronsPartHere: 2.5871s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 2.3578s ✅
-NeuronsPresynapticHere: 1.8445s ✅
-NeuronsPostsynapticHere: 2.1666s ✅
-NeuronNeuronConnectivity: 1.8148s ✅
+NeuronsSynaptic: 2.4935s ✅
+NeuronsPresynapticHere: 2.2946s ✅
+NeuronsPostsynapticHere: 2.2910s ✅
+NeuronNeuronConnectivity: 2.1211s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.8139s ✅
-PartsOf: 1.8362s ✅
-SubclassesOf: 1.7836s ✅
+ComponentsOf: 1.9615s ✅
+PartsOf: 2.0212s ✅
+SubclassesOf: 1.9747s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.8310s ✅
-TractsNervesInnervatingHere: 1.8334s ✅
-LineageClonesIn: 1.8157s ✅
+NeuronClassesFasciculatingHere: 1.9209s ✅
+TractsNervesInnervatingHere: 1.9600s ✅
+LineageClonesIn: 2.1855s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 3.0411s ✅
-ImagesThatDevelopFrom: 2.0473s ✅
-epFrag: 1.8177s ✅
+ImagesNeurons: 3.2784s ✅
+ImagesThatDevelopFrom: 2.0427s ✅
+epFrag: 1.9753s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.8402s ✅
+ListAllAvailableImages: 1.9490s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.8952s ✅
-NeuronRegionConnectivityQuery: 1.8167s ✅
+NeuronNeuronConnectivityQuery: 1.9826s ✅
+NeuronRegionConnectivityQuery: 1.9815s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 1.0869s ✅
+SimilarMorphologyTo: 1.1560s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 3.1926s ✅
+NeuronInputsTo: 3.1656s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 1.2667s ✅
+ExpressionOverlapsHere: 1.3364s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 0.8970s ✅
+anatScRNAseqQuery: 0.9989s ✅
   └─ Found 57 total clusters, returned 10
-clusterExpression: 0.9613s ✅
+clusterExpression: 36.8724s ✅
   └─ Found 4589 genes expressed, returned 10
-expressionCluster: 0.7508s ✅
+clusterExpression: Skipped (test data may not exist): 36.87243103981018 not less than 15.0 : clusterExpression exceeded threshold
+expressionCluster: 0.9940s ✅
   └─ Found 9 clusters expressing gene
-scRNAdatasetData: 0.7180s ✅
+scRNAdatasetData: 0.9422s ✅
   └─ Found 13 clusters in dataset, returned 10
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 1.0810s ✅
+SimilarMorphologyTo: 1.0773s ✅
   └─ Found 215 NBLAST matches, returned 10
-SimilarMorphologyToPartOf: 0.8339s ✅
+SimilarMorphologyToPartOf: 0.9308s ✅
   └─ Found 0 NBLASTexp matches
-SimilarMorphologyToPartOfexp: 0.7011s ✅
+SimilarMorphologyToPartOfexp: 0.8135s ✅
   └─ Found 0 reverse NBLASTexp matches
-SimilarMorphologyToNB: 0.7018s ✅
+SimilarMorphologyToNB: 1.4490s ✅
   └─ Found 15 NeuronBridge matches, returned 10
-SimilarMorphologyToNBexp: 0.8286s ✅
+SimilarMorphologyToNBexp: 0.7703s ✅
   └─ Found 15 NeuronBridge expression matches, returned 10
 ✅ All NBLAST similarity queries completed
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.8968s ✅
+PaintedDomains: 0.9700s ✅
   └─ Found 46 painted domains, returned 10
-DatasetImages: 0.7212s ✅
+DatasetImages: 0.9247s ✅
   └─ Found 46 images in dataset, returned 10
-AllAlignedImages: 2.2622s ✅
+AllAlignedImages: 5.7883s ✅
   └─ Found 378914 aligned images, returned 10
-AlignedDatasets: 0.9065s ✅
-  └─ Found 72 aligned datasets, returned 10
-AllDatasets: 0.9817s ✅
-  └─ Found 116 total datasets, returned 20
-✅ All dataset/template queries completed
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.8926s ✅
+TermsForPub: 1.0230s ✅
   └─ Found 2 terms for publication
-TransgeneExpressionHere: 1.6795s ✅
+TransgeneExpressionHere: 1.9417s ✅
   └─ Found 2346 transgene expressions, returned 10
 ✅ All publication/transgene queries completed
 
@@ -252,7 +257,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 3.681s
+Ran 1 test in 3.944s
 
 OK
 VFBquery functions patched with caching support
@@ -262,9 +267,9 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.8694 seconds
-VFB_00101567 query took: 1.8115 seconds
-Total time for both queries: 3.6809 seconds
+FBbt_00003748 query took: 1.9490 seconds
+VFB_00101567 query took: 1.9940 seconds
+Total time for both queries: 3.9429 seconds
 Performance Level: 🟠 Acceptable (3-6 seconds)
 ==================================================
 Performance test completed successfully!
@@ -283,4 +288,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-02-04 12:22:27 UTC*
+*Last updated: 2026-02-04 19:15:54 UTC*