Merge branch 'main' of https://github.com/VirtualFlyBrain/VFBquery

Author: Robbie1977

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-02-04 11:52:48 UTC
-**Git Commit:** 8b105f408f45c0a2d0c518fff2dbf897c0ec334f
+**Test Date:** 2026-02-04 11:58:25 UTC
+**Git Commit:** 1267c75c5830dbfac7023dd43a3ecf2dfa87a164
 **Branch:** main
-**Workflow Run:** [21670339109](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21670339109)
+**Workflow Run:** [21670491359](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21670491359)
 
 ## Test Overview
 
@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
 Test publication and transgene queries ... ok
 
 ----------------------------------------------------------------------
-Ran 15 tests in 64.286s
+Ran 15 tests in 86.378s
 
 OK
 VFBquery functions patched with caching support
@@ -128,118 +128,119 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 1.9645s ✅
-get_term_info (individual): 1.5726s ✅
+get_term_info (mushroom body): 2.5659s ✅
+get_term_info (individual): 1.9124s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.0742s ✅
+NeuronsPartHere: 2.0117s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 1.6343s ✅
-NeuronsPresynapticHere: 1.7605s ✅
-NeuronsPostsynapticHere: 1.6514s ✅
-NeuronNeuronConnectivity: 1.3420s ✅
+NeuronsSynaptic: 2.1341s ✅
+NeuronsPresynapticHere: 1.7061s ✅
+NeuronsPostsynapticHere: 1.9262s ✅
+NeuronNeuronConnectivity: 1.6519s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.4033s ✅
-PartsOf: 1.1692s ✅
-SubclassesOf: 1.8569s ✅
+ComponentsOf: 1.6847s ✅
+PartsOf: 1.6705s ✅
+SubclassesOf: 1.6431s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.1820s ✅
-TractsNervesInnervatingHere: 1.4192s ✅
-LineageClonesIn: 1.2184s ✅
+NeuronClassesFasciculatingHere: 1.6730s ✅
+TractsNervesInnervatingHere: 1.6720s ✅
+LineageClonesIn: 1.6702s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 2.4185s ✅
-ImagesThatDevelopFrom: 1.2455s ✅
-epFrag: 1.2641s ✅
+ImagesNeurons: 2.8032s ✅
+ImagesThatDevelopFrom: 1.7053s ✅
+epFrag: 1.6596s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.1833s ✅
+ListAllAvailableImages: 1.6743s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.1753s ✅
-NeuronRegionConnectivityQuery: 1.1746s ✅
+NeuronNeuronConnectivityQuery: 1.6558s ✅
+NeuronRegionConnectivityQuery: 1.6599s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.7004s ✅
+SimilarMorphologyTo: 0.9951s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 2.7290s ✅
+NeuronInputsTo: 2.7952s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 0.8909s ✅
+ExpressionOverlapsHere: 1.2041s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 0.5957s ✅
+anatScRNAseqQuery: 0.8862s ✅
   └─ Found 0 total clusters
-clusterExpression: 0.6691s ✅
-  └─ Found 0 genes expressed
-expressionCluster: 0.6941s ✅
+clusterExpression: 18.4236s ✅
+  └─ Found 4589 genes expressed, returned 10
+clusterExpression: Skipped (test data may not exist): 18.423635721206665 not less than 15.0 : clusterExpression exceeded threshold
+expressionCluster: 0.7717s ✅
   └─ Found 9 clusters expressing gene
-scRNAdatasetData: 0.5846s ✅
+scRNAdatasetData: 0.7665s ✅
   └─ Found 0 clusters in dataset
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 0.8251s ✅
+SimilarMorphologyTo: 0.9019s ✅
   └─ Found 215 NBLAST matches, returned 10
-SimilarMorphologyToPartOf: 0.6521s ✅
+SimilarMorphologyToPartOf: 0.6676s ✅
   └─ Found 0 NBLASTexp matches
-SimilarMorphologyToPartOfexp: 0.5714s ✅
+SimilarMorphologyToPartOfexp: 0.7631s ✅
   └─ Found 0 reverse NBLASTexp matches
-SimilarMorphologyToNB: 0.5606s ✅
+SimilarMorphologyToNB: 0.6455s ✅
   └─ Found 15 NeuronBridge matches, returned 10
-SimilarMorphologyToNBexp: 0.4788s ✅
+SimilarMorphologyToNBexp: 0.6649s ✅
   └─ Found 15 NeuronBridge expression matches, returned 10
 ✅ All NBLAST similarity queries completed
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 1.9671s ✅
+PaintedDomains: 0.8359s ✅
   └─ Found 46 painted domains, returned 10
-DatasetImages: 0.4731s ✅
+DatasetImages: 0.6517s ✅
   └─ Found 46 images in dataset, returned 10
-AllAlignedImages: 2.0337s ✅
+AllAlignedImages: 2.3379s ✅
   └─ Found 378914 aligned images, returned 10
-AlignedDatasets: 2.1349s ✅
+AlignedDatasets: 0.8324s ✅
   └─ Found 72 aligned datasets, returned 10
-AllDatasets: 0.6835s ✅
+AllDatasets: 0.8356s ✅
   └─ Found 116 total datasets, returned 20
 ✅ All dataset/template queries completed
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 1.0642s ✅
+TermsForPub: 0.8284s ✅
   └─ Found 2 terms for publication
-TransgeneExpressionHere: 1.2372s ✅
+TransgeneExpressionHere: 1.5253s ✅
   └─ Found 2346 transgene expressions, returned 10
 ✅ All publication/transgene queries completed
 
@@ -252,7 +253,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 2.392s
+Ran 1 test in 3.397s
 
 OK
 VFBquery functions patched with caching support
@@ -262,10 +263,10 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.2008 seconds
-VFB_00101567 query took: 1.1905 seconds
-Total time for both queries: 2.3913 seconds
-Performance Level: 🟡 Good (1.5-3 seconds)
+FBbt_00003748 query took: 1.6751 seconds
+VFB_00101567 query took: 1.7213 seconds
+Total time for both queries: 3.3964 seconds
+Performance Level: 🟠 Acceptable (3-6 seconds)
 ==================================================
 Performance test completed successfully!
 ```
@@ -283,4 +284,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-02-04 11:52:48 UTC*
+*Last updated: 2026-02-04 11:58:25 UTC*