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Robbie1977Robbie1977
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Refactor code structure for improved readability and maintainability
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‎update_instances_templates.py‎

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import ast
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# Read the current test_results.py
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with open('test_results.py', 'r') as f:
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content = f.read()
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# Parse the results list
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tree = ast.parse(content)
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results_assign = None
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for node in ast.walk(tree):
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if isinstance(node, ast.Assign) and len(node.targets) == 1 and isinstance(node.targets[0], ast.Name) and node.targets[0].id == 'results':
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results_assign = node
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break
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if not results_assign:
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raise ValueError("Could not find results assignment")
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# Get the current results list
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current_results = ast.literal_eval(ast.unparse(results_assign.value))
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# New instances data (from the diff test output for example #4)
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new_instances = {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"label": {
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"title": "Name",
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"type": "markdown",
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"order": 0,
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"sort": {
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"0": "Asc"
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}
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},
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"parent": {
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"title": "Parent Type",
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"type": "markdown",
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"order": 1
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},
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"template": {
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"title": "Template",
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"type": "markdown",
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"order": 4
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},
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"tags": {
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"title": "Gross Types",
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"type": "tags",
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"order": 3
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},
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"source": {
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"title": "Data Source",
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"type": "markdown",
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"order": 5
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},
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"source_id": {
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"title": "Data Source",
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"type": "markdown",
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"order": 6
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},
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"dataset": {
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"title": "Dataset",
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"type": "markdown",
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"order": 7
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},
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"license": {
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"title": "License",
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"type": "markdown",
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"order": 8
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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}
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},
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"rows": [
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{
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"id": "VFB_00102107",
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"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"parent": "[medulla](FBbt_00003748)",
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"source": "",
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"source_id": "",
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"template": "[JRC2018U](VFB_00101567)",
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"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
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"license": "",
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"thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png \"ME on JRC2018Unisex adult brain aligned to JRC2018U\")](VFB_00101567,VFB_00102107)"
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},
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{
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"id": "VFB_00101385",
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"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
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"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
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"parent": "[medulla](FBbt_00003748)",
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"source": "",
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"source_id": "",
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"template": "[JRCFIB2018Fum](VFB_00101384)",
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"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
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"license": "",
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"thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png \"ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum\")](VFB_00101384,VFB_00101385)"
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},
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{
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"id": "VFB_00030810",
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"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"parent": "[medulla](FBbt_00003748)",
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"source": "",
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"source_id": "",
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"template": "[adult brain template Ito2014](VFB_00030786)",
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"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
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"license": "",
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"thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png \"medulla on adult brain template Ito2014 aligned to adult brain template Ito2014\")](VFB_00030786,VFB_00030810)"
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},
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{
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"id": "VFB_00030624",
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"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
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"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
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"parent": "[medulla](FBbt_00003748)",
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"source": "",
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"source_id": "",
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"template": "[JFRC2](VFB_00017894)",
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"dataset": "[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)",
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"license": "",
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"thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png \"medulla on adult brain template JFRC2 aligned to JFRC2\")](VFB_00017894,VFB_00030624)"
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}
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],
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"count": 4
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}
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# New templates data (from the diff test output for example #5)
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new_templates = {
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"headers": {
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"id": {
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"title": "Add",
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"type": "selection_id",
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"order": -1
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},
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"order": {
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"title": "Order",
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"type": "numeric",
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"order": 1,
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"sort": {
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"0": "Asc"
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}
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},
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"name": {
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"title": "Name",
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"type": "markdown",
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"order": 1,
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"sort": {
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"1": "Asc"
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}
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},
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"tags": {
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"title": "Tags",
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"type": "tags",
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"order": 2
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},
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"thumbnail": {
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"title": "Thumbnail",
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"type": "markdown",
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"order": 9
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},
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"dataset": {
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"title": "Dataset",
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"type": "metadata",
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"order": 3
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},
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"license": {
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"title": "License",
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"type": "metadata",
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"order": 4
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}
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},
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"rows": [
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{
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"id": "VFB_00200000",
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"order": 2,
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"name": "[JRCVNC2018U](VFB_00200000)",
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"tags": "Nervous_system|Adult|Ganglion",
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"thumbnail": "[![JRCVNC2018U](http://www.virtualflybrain.org/data/VFB/i/0020/0000/VFB_00200000/thumbnail.png 'JRCVNC2018U')](VFB_00200000)",
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"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
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"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
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},
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{
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"id": "VFB_00120000",
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"order": 10,
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"name": "[Adult T1 Leg (Kuan2020)](VFB_00120000)",
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"tags": "Adult|Anatomy",
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"thumbnail": "[![Adult T1 Leg (Kuan2020)](http://www.virtualflybrain.org/data/VFB/i/0012/0000/VFB_00120000/thumbnail.png 'Adult T1 Leg (Kuan2020)')](VFB_00120000)",
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"dataset": "[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)",
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"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
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},
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{
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"id": "VFB_00110000",
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"order": 9,
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"name": "[Adult Head (McKellar2020)](VFB_00110000)",
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"tags": "Adult|Anatomy",
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"thumbnail": "[![Adult Head (McKellar2020)](http://www.virtualflybrain.org/data/VFB/i/0011/0000/VFB_00110000/thumbnail.png 'Adult Head (McKellar2020)')](VFB_00110000)",
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"dataset": "[GAL4 lines from McKellar et al., 2020](McKellar2020)",
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"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
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},
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{
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"id": "VFB_00101567",
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"order": 1,
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"name": "[JRC2018U](VFB_00101567)",
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"tags": "Nervous_system|Adult",
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"thumbnail": "[![JRC2018U](http://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png 'JRC2018U')](VFB_00101567)",
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"dataset": "[JRC 2018 templates & ROIs](JRC2018)",
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"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
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},
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{
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"id": "VFB_00101384",
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"order": 4,
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"name": "[JRCFIB2018Fum](VFB_00101384)",
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"tags": "Nervous_system|Adult",
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"thumbnail": "[![JRCFIB2018Fum](http://www.virtualflybrain.org/data/VFB/i/0010/1384/VFB_00101384/thumbnail.png 'JRCFIB2018Fum')](VFB_00101384)",
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"dataset": "[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)",
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"license": "[CC_BY](VFBlicense_CC_BY_4_0)"
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},
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{
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"id": "VFB_00100000",
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"order": 7,
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"name": "[COURT2018VNS](VFB_00100000)",
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"tags": "Nervous_system|Adult|Ganglion",
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"thumbnail": "[![COURT2018VNS](http://www.virtualflybrain.org/data/VFB/i/0010/0000/VFB_00100000/thumbnail.png 'COURT2018VNS')](VFB_00100000)",
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"dataset": "[Adult VNS neuropils (Court2017)](Court2017)",
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"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
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},
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{
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"id": "VFB_00050000",
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"order": 5,
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"name": "[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)",
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"tags": "Nervous_system|Larva",
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"thumbnail": "[![L1 larval CNS ssTEM - Cardona/Janelia](http://www.virtualflybrain.org/data/VFB/i/0005/0000/VFB_00050000/thumbnail.png 'L1 larval CNS ssTEM - Cardona/Janelia')](VFB_00050000)",
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"dataset": "[larval hugin neurons - EM (Schlegel2016)](Schlegel2016), [Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)",
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"license": "[CC_BY](VFBlicense_CC_BY_4_0), [CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
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},
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{
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"id": "VFB_00049000",
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"order": 6,
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"name": "[L3 CNS template - Wood2018](VFB_00049000)",
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"tags": "Nervous_system|Larva",
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"thumbnail": "[![L3 CNS template - Wood2018](http://www.virtualflybrain.org/data/VFB/i/0004/9000/VFB_00049000/thumbnail.png 'L3 CNS template - Wood2018')](VFB_00049000)",
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"dataset": "[L3 Larval CNS Template (Truman2016)](Truman2016)",
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"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
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},
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{
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"id": "VFB_00030786",
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"order": 8,
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"name": "[adult brain template Ito2014](VFB_00030786)",
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"tags": "Nervous_system|Adult",
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"thumbnail": "[![adult brain template Ito2014](http://www.virtualflybrain.org/data/VFB/i/0003/0786/VFB_00030786/thumbnail.png 'adult brain template Ito2014')](VFB_00030786)",
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"dataset": "[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)",
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"license": "[CC_BY_SA](VFBlicense_CC_BY_SA_4_0)"
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},
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{
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"id": "VFB_00017894",
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"order": 3,
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"name": "[JFRC2](VFB_00017894)",
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"tags": "Nervous_system|Adult",
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"thumbnail": "[![JFRC2](http://www.virtualflybrain.org/data/VFB/i/0001/7894/VFB_00017894/thumbnail.png 'JFRC2')](VFB_00017894)",
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"dataset": "[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)",
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"license": "[CC-BY-NC-SA](VFBlicense_CC_BY_NC_SA_4_0)"
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}
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],
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"count": 10
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}
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# Update the results
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current_results[3] = new_instances
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current_results[4] = new_templates
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# Write back to file
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import pprint
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with open('test_results.py', 'w') as f:
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f.write('results = ')
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f.write(pprint.pformat(current_results, width=120))
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f.write('\n')
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print("Updated test_results.py with new instances and templates data.")

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