Merge branch 'main' of https://github.com/VirtualFlyBrain/VFBquery

Author: Robbie1977

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-01-27 15:17:20 UTC
-**Git Commit:** ac024f50e4d7bc98837fded86f06b1829e95b478
+**Test Date:** 2026-01-27 18:34:25 UTC
+**Git Commit:** 79bb56c458f0839f33adf6e7a637e2bb927ffc80
 **Branch:** main
-**Workflow Run:** [21402713256](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21402713256)
+**Workflow Run:** [21409343171](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21409343171)
 
 ## Test Overview
 
@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
 Test publication and transgene queries ... ok
 
 ----------------------------------------------------------------------
-Ran 15 tests in 44.505s
+Ran 15 tests in 56.387s
 
 OK
 VFBquery functions patched with caching support
@@ -128,118 +128,118 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 1.9705s ✅
-get_term_info (individual): 1.5969s ✅
+get_term_info (mushroom body): 2.3866s ✅
+get_term_info (individual): 2.4151s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.2407s ✅
+NeuronsPartHere: 2.3345s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 2.1020s ✅
-NeuronsPresynapticHere: 1.6621s ✅
-NeuronsPostsynapticHere: 1.6292s ✅
-NeuronNeuronConnectivity: 1.3991s ✅
+NeuronsSynaptic: 2.1678s ✅
+NeuronsPresynapticHere: 1.8441s ✅
+NeuronsPostsynapticHere: 2.0998s ✅
+NeuronNeuronConnectivity: 1.9843s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.3804s ✅
-PartsOf: 1.3842s ✅
-SubclassesOf: 1.3935s ✅
+ComponentsOf: 1.8003s ✅
+PartsOf: 1.8523s ✅
+SubclassesOf: 1.8281s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 1.4913s ✅
-TractsNervesInnervatingHere: 1.3762s ✅
-LineageClonesIn: 1.3853s ✅
+NeuronClassesFasciculatingHere: 1.8296s ✅
+TractsNervesInnervatingHere: 1.7945s ✅
+LineageClonesIn: 1.8121s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 1.4017s ✅
-ImagesThatDevelopFrom: 1.4257s ✅
-epFrag: 1.3996s ✅
+ImagesNeurons: 1.8419s ✅
+ImagesThatDevelopFrom: 1.7726s ✅
+epFrag: 1.7836s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.4099s ✅
+ListAllAvailableImages: 1.8095s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.3852s ✅
-NeuronRegionConnectivityQuery: 1.3962s ✅
+NeuronNeuronConnectivityQuery: 1.7820s ✅
+NeuronRegionConnectivityQuery: 1.8292s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.8281s ✅
+SimilarMorphologyTo: 1.0780s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 3.0147s ✅
+NeuronInputsTo: 3.4846s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 0.8043s ✅
+ExpressionOverlapsHere: 2.2544s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 0.6866s ✅
+anatScRNAseqQuery: 0.8748s ✅
   └─ Found 0 total clusters
-clusterExpression: 0.7804s ✅
+clusterExpression: 0.8330s ✅
   └─ Found 0 genes expressed
-expressionCluster: 0.5621s ✅
+expressionCluster: 0.7233s ✅
   └─ Found 0 clusters expressing gene
-scRNAdatasetData: 0.6824s ✅
+scRNAdatasetData: 0.7389s ✅
   └─ Found 0 clusters in dataset
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 0.7945s ✅
+SimilarMorphologyTo: 1.1559s ✅
   └─ Found 215 NBLAST matches, returned 10
-SimilarMorphologyToPartOf: 0.5427s ✅
+SimilarMorphologyToPartOf: 0.7081s ✅
   └─ Found 0 NBLASTexp matches
-SimilarMorphologyToPartOfexp: 0.5516s ✅
+SimilarMorphologyToPartOfexp: 0.7085s ✅
   └─ Found 0 reverse NBLASTexp matches
-SimilarMorphologyToNB: 0.5588s ✅
+SimilarMorphologyToNB: 0.6809s ✅
   └─ Found 15 NeuronBridge matches, returned 10
-SimilarMorphologyToNBexp: 0.7563s ✅
+SimilarMorphologyToNBexp: 0.6950s ✅
   └─ Found 15 NeuronBridge expression matches, returned 10
 ✅ All NBLAST similarity queries completed
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.6636s ✅
+PaintedDomains: 0.7159s ✅
   └─ Found 0 painted domains
-DatasetImages: 0.5743s ✅
+DatasetImages: 0.8228s ✅
   └─ Found 0 images in dataset
-AllAlignedImages: 0.5532s ✅
+AllAlignedImages: 0.6860s ✅
   └─ Found 0 aligned images
-AlignedDatasets: 0.7305s ✅
+AlignedDatasets: 0.8699s ✅
   └─ Found 0 aligned datasets
-AllDatasets: 0.8465s ✅
+AllDatasets: 0.9777s ✅
   └─ Found 116 total datasets, returned 20
 ✅ All dataset/template queries completed
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.5312s ✅
+TermsForPub: 0.6524s ✅
   └─ Found 0 terms for publication
-TransgeneExpressionHere: 0.6100s ✅
+TransgeneExpressionHere: 0.7556s ✅
   └─ Found 2346 transgene expressions, returned 10
 ✅ All publication/transgene queries completed
 
@@ -252,7 +252,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 2.858s
+Ran 1 test in 3.704s
 
 OK
 VFBquery functions patched with caching support
@@ -262,10 +262,10 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.4502 seconds
-VFB_00101567 query took: 1.4078 seconds
-Total time for both queries: 2.8580 seconds
-Performance Level: 🟡 Good (1.5-3 seconds)
+FBbt_00003748 query took: 1.7962 seconds
+VFB_00101567 query took: 1.9079 seconds
+Total time for both queries: 3.7041 seconds
+Performance Level: 🟠 Acceptable (3-6 seconds)
 ==================================================
 Performance test completed successfully!
 ```
@@ -283,4 +283,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-01-27 15:17:20 UTC*
+*Last updated: 2026-01-27 18:34:25 UTC*