Update performance test results [skip ci]

Author: actions-user

performance.md

@@ -1,9 +1,9 @@
 # VFBquery Performance Test Results
 
-**Test Date:** 2026-02-07 04:03:14 UTC
-**Git Commit:** 33869fc9161af2b8148ba6776800945472539c22
+**Test Date:** 2026-02-08 04:29:35 UTC
+**Git Commit:** e951da88021bcee0c4c9a5a1050d655b51ba649d
 **Branch:** main
-**Workflow Run:** [21773832018](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21773832018)
+**Workflow Run:** [21792218296](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21792218296)
 
 ## Test Overview
 
@@ -111,14 +111,23 @@ Test scRNAseq transcriptomics queries ... ok
 test_12_nblast_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test NBLAST similarity queries ... ok
 test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
-Test dataset and template queries ... ok
+Test dataset and template queries ... FAIL
 test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerformanceTest)
 Test publication and transgene queries ... ok
 
+======================================================================
+FAIL: test_13_dataset_template_queries (src.test.test_query_performance.QueryPerformanceTest)
+Test dataset and template queries
 ----------------------------------------------------------------------
-Ran 15 tests in 86.578s
+Traceback (most recent call last):
+  File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 693, in test_13_dataset_template_queries
+    self.assertLess(duration, self.THRESHOLD_MEDIUM, "AllDatasets exceeded threshold")
+AssertionError: 10.023972749710083 not less than 3.0 : AllDatasets exceeded threshold
 
-OK
+----------------------------------------------------------------------
+Ran 15 tests in 112.533s
+
+FAILED (failures=1)
 VFBquery functions patched with caching support
 VFBquery: SOLR caching enabled by default (3-month TTL)
          Disable with: export VFBQUERY_CACHE_ENABLED=false
@@ -128,118 +137,118 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ================================================================================
 TERM INFO QUERIES
 ================================================================================
-get_term_info (mushroom body): 2.1332s ✅
-get_term_info (individual): 2.2596s ✅
+get_term_info (mushroom body): 1.9936s ✅
+get_term_info (individual): 1.7380s ✅
 
 ================================================================================
 NEURON PART OVERLAP QUERIES
 ================================================================================
-NeuronsPartHere: 2.4139s ✅
+NeuronsPartHere: 2.0688s ✅
 
 ================================================================================
 SYNAPTIC TERMINAL QUERIES
 ================================================================================
-NeuronsSynaptic: 2.1676s ✅
-NeuronsPresynapticHere: 1.9901s ✅
-NeuronsPostsynapticHere: 2.0320s ✅
-NeuronNeuronConnectivity: 2.0710s ✅
+NeuronsSynaptic: 1.8044s ✅
+NeuronsPresynapticHere: 1.4005s ✅
+NeuronsPostsynapticHere: 1.6263s ✅
+NeuronNeuronConnectivity: 1.4913s ✅
 
 ================================================================================
 ANATOMICAL HIERARCHY QUERIES
 ================================================================================
-ComponentsOf: 1.9877s ✅
-PartsOf: 1.5494s ✅
-SubclassesOf: 1.5225s ✅
+ComponentsOf: 1.5240s ✅
+PartsOf: 1.3862s ✅
+SubclassesOf: 1.4190s ✅
 
 ================================================================================
 TRACT/NERVE AND LINEAGE QUERIES
 ================================================================================
-NeuronClassesFasciculatingHere: 2.0088s ✅
-TractsNervesInnervatingHere: 1.5094s ✅
-LineageClonesIn: 4.4899s ✅
+NeuronClassesFasciculatingHere: 1.3899s ✅
+TractsNervesInnervatingHere: 1.3959s ✅
+LineageClonesIn: 1.3961s ✅
 
 ================================================================================
 IMAGE AND DEVELOPMENTAL QUERIES
 ================================================================================
-ImagesNeurons: 2.7388s ✅
-ImagesThatDevelopFrom: 1.6009s ✅
-epFrag: 1.5409s ✅
+ImagesNeurons: 2.3807s ✅
+ImagesThatDevelopFrom: 1.4565s ✅
+epFrag: 1.3855s ✅
 
 ================================================================================
 INSTANCE QUERIES
 ================================================================================
-ListAllAvailableImages: 1.5460s ✅
+ListAllAvailableImages: 1.3872s ✅
 
 ================================================================================
 CONNECTIVITY QUERIES
 ================================================================================
-NeuronNeuronConnectivityQuery: 1.5640s ✅
-NeuronRegionConnectivityQuery: 1.5705s ✅
+NeuronNeuronConnectivityQuery: 1.3879s ✅
+NeuronRegionConnectivityQuery: 1.3807s ✅
 
 ================================================================================
 SIMILARITY QUERIES (Neo4j NBLAST)
 ================================================================================
-SimilarMorphologyTo: 0.8033s ✅
+SimilarMorphologyTo: 0.8412s ✅
 
 ================================================================================
 NEURON INPUT QUERIES (Neo4j)
 ================================================================================
-NeuronInputsTo: 2.9703s ✅
+NeuronInputsTo: 2.9633s ✅
 
 ================================================================================
 EXPRESSION PATTERN QUERIES (Neo4j)
 ================================================================================
-ExpressionOverlapsHere: 1.0902s ✅
+ExpressionOverlapsHere: 1.0251s ✅
   └─ Found 3922 total expression patterns, returned 10
 
 ================================================================================
 TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
 ================================================================================
-anatScRNAseqQuery: 0.8016s ✅
+anatScRNAseqQuery: 0.7000s ✅
   └─ Found 57 total clusters, returned 10
-clusterExpression: 7.2974s ✅
+clusterExpression: 40.7768s ✅
   └─ Found 4589 genes expressed, returned 10
-expressionCluster: 0.8660s ✅
+clusterExpression: Skipped (test data may not exist): 40.77678728103638 not less than 15.0 : clusterExpression exceeded threshold
+expressionCluster: 0.7019s ✅
   └─ Found 9 clusters expressing gene
-scRNAdatasetData: 0.8278s ✅
+scRNAdatasetData: 0.7160s ✅
   └─ Found 13 clusters in dataset, returned 10
 
 ================================================================================
 NBLAST SIMILARITY QUERIES
 ================================================================================
-SimilarMorphologyTo: 1.1249s ✅
+SimilarMorphologyTo: 1.6848s ✅
   └─ Found 215 NBLAST matches, returned 10
-SimilarMorphologyToPartOf: 0.7215s ✅
+SimilarMorphologyToPartOf: 0.5628s ✅
   └─ Found 0 NBLASTexp matches
-SimilarMorphologyToPartOfexp: 0.7113s ✅
+SimilarMorphologyToPartOfexp: 0.5504s ✅
   └─ Found 0 reverse NBLASTexp matches
-SimilarMorphologyToNB: 0.5755s ✅
+SimilarMorphologyToNB: 0.6513s ✅
   └─ Found 15 NeuronBridge matches, returned 10
-SimilarMorphologyToNBexp: 0.6026s ✅
+SimilarMorphologyToNBexp: 0.5541s ✅
   └─ Found 15 NeuronBridge expression matches, returned 10
 ✅ All NBLAST similarity queries completed
 
 ================================================================================
 DATASET/TEMPLATE QUERIES
 ================================================================================
-PaintedDomains: 0.7544s ✅
+PaintedDomains: 0.7006s ✅
   └─ Found 46 painted domains, returned 10
-DatasetImages: 1.3321s ✅
+DatasetImages: 0.6642s ✅
   └─ Found 46 images in dataset, returned 10
-AllAlignedImages: 2.1378s ✅
+AllAlignedImages: 2.5651s ✅
   └─ Found 378914 aligned images, returned 10
-AlignedDatasets: 0.7746s ✅
+AlignedDatasets: 0.6993s ✅
   └─ Found 72 aligned datasets, returned 10
-AllDatasets: 1.0165s ✅
+AllDatasets: 10.0240s ✅
   └─ Found 116 total datasets, returned 20
-✅ All dataset/template queries completed
 
 ================================================================================
 PUBLICATION/TRANSGENE QUERIES
 ================================================================================
-TermsForPub: 0.7584s ✅
+TermsForPub: 0.6953s ✅
   └─ Found 2 terms for publication
-TransgeneExpressionHere: 1.6095s ✅
+TransgeneExpressionHere: 1.5591s ✅
   └─ Found 2346 transgene expressions, returned 10
 ✅ All publication/transgene queries completed
 
@@ -252,7 +261,7 @@ test_term_info_performance (src.test.term_info_queries_test.TermInfoQueriesTest)
 Performance test for specific term info queries. ... ok
 
 ----------------------------------------------------------------------
-Ran 1 test in 3.079s
+Ran 1 test in 2.813s
 
 OK
 VFBquery functions patched with caching support
@@ -262,10 +271,10 @@ VFBquery: SOLR caching enabled by default (3-month TTL)
 ==================================================
 Performance Test Results:
 ==================================================
-FBbt_00003748 query took: 1.5555 seconds
-VFB_00101567 query took: 1.5233 seconds
-Total time for both queries: 3.0788 seconds
-Performance Level: 🟠 Acceptable (3-6 seconds)
+FBbt_00003748 query took: 1.4024 seconds
+VFB_00101567 query took: 1.4107 seconds
+Total time for both queries: 2.8130 seconds
+Performance Level: 🟡 Good (1.5-3 seconds)
 ==================================================
 Performance test completed successfully!
 ```
@@ -283,4 +292,4 @@ Track performance trends across commits:
 - [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
 
 ---
-*Last updated: 2026-02-07 04:03:14 UTC*
+*Last updated: 2026-02-08 04:29:35 UTC*