stock/combo tools

Author: Clare72

src/vfbquery/vfb_queries.py

@@ -995,11 +995,27 @@ def term_info_parse_object(results, short_form):
         if sf.startswith(("FBgn", "FBal", "FBti", "FBtp", "FBco", "FBst")):
             q = FindStocks_to_schema(termInfo["Name"], {"short_form": sf})
             queries.append(q)
+            # Also surface the dedicated find_stocks MCP tool, which exposes
+            # the optional collection_filter parameter (Bloomington, Kyoto,
+            # VDRC, etc.) that the run_query/FindStocks path does not.
+            termInfo["RelatedTools"].append({
+                "tool": "find_stocks",
+                "label": f"Find fly stocks for {termInfo['Name']} (with optional stock-centre filter)",
+                "default_args": {"feature_id": sf},
+            })
 
         # FlyBase combination publications — for FBco terms
         if sf.startswith("FBco"):
             q = FindComboPublications_to_schema(termInfo["Name"], {"short_form": sf})
             queries.append(q)
+            # Also surface the dedicated find_combo_publications MCP tool,
+            # which returns full per-publication metadata (DOI, PMID, miniref,
+            # year) ready for citation rendering.
+            termInfo["RelatedTools"].append({
+                "tool": "find_combo_publications",
+                "label": f"Find publications for {termInfo['Name']} (with full citation metadata)",
+                "default_args": {"fbco_id": sf},
+            })
 
         # For individuals that are painted domains of anatomical regions, add parent class queries
         if termInfo["IsIndividual"] and termInfo["Technique"] and any('computer' in t.lower() for t in termInfo["Technique"]):