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Update performance test results [skip ci]
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‎performance.md‎

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# VFBquery Performance Test Results
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**Test Date:** 2025-11-09 03:12:08 UTC
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**Git Commit:** 4f601867d3d4b36e634c8f4f6df6340e2674074b
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**Test Date:** 2025-11-10 03:14:54 UTC
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**Git Commit:** 093a983f213701929365b1c10ab2e620d151c64b
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**Branch:** main
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**Workflow Run:** [19202481605](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/19202481605)
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**Workflow Run:** [19219404018](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/19219404018)
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## Test Overview
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```
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test_01_term_info_queries (src.test.test_query_performance.QueryPerformanceTest)
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Test term info query performance ... ERROR: Owlery query failed: HTTPConnectionPool(host='owl.virtualflybrain.org', port=80): Read timed out. (read timeout=120)
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Test URL: http://owl.virtualflybrain.org/kbs/vfb/subclasses?object=%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_00005106%3E%20and%20%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_0002110%3E%20some%20%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_00003748%3E
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Traceback (most recent call last):
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connectionpool.py", line 536, in _make_request
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response = conn.getresponse()
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connection.py", line 507, in getresponse
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httplib_response = super().getresponse()
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/http/client.py", line 1348, in getresponse
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response.begin()
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/http/client.py", line 316, in begin
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version, status, reason = self._read_status()
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/http/client.py", line 277, in _read_status
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line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/socket.py", line 669, in readinto
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return self._sock.recv_into(b)
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socket.timeout: timed out
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The above exception was the direct cause of the following exception:
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Traceback (most recent call last):
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/adapters.py", line 667, in send
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resp = conn.urlopen(
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connectionpool.py", line 843, in urlopen
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retries = retries.increment(
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/util/retry.py", line 474, in increment
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raise reraise(type(error), error, _stacktrace)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/util/util.py", line 39, in reraise
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raise value
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connectionpool.py", line 789, in urlopen
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response = self._make_request(
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connectionpool.py", line 538, in _make_request
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self._raise_timeout(err=e, url=url, timeout_value=read_timeout)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/urllib3/connectionpool.py", line 369, in _raise_timeout
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raise ReadTimeoutError(
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urllib3.exceptions.ReadTimeoutError: HTTPConnectionPool(host='owl.virtualflybrain.org', port=80): Read timed out. (read timeout=120)
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During handling of the above exception, another exception occurred:
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Traceback (most recent call last):
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/vfbquery/vfb_queries.py", line 2247, in _owlery_query_to_results
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class_ids = vc.vfb.oc.get_subclasses(
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/vfbquery/owlery_client.py", line 105, in get_subclasses
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response = requests.get(
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/api.py", line 73, in get
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return request("get", url, params=params, **kwargs)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/api.py", line 59, in request
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return session.request(method=method, url=url, **kwargs)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/sessions.py", line 589, in request
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resp = self.send(prep, **send_kwargs)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/sessions.py", line 703, in send
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r = adapter.send(request, **kwargs)
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File "/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/requests/adapters.py", line 713, in send
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raise ReadTimeout(e, request=request)
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requests.exceptions.ReadTimeout: HTTPConnectionPool(host='owl.virtualflybrain.org', port=80): Read timed out. (read timeout=120)
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Query returned error result for neurons_postsynaptic(FBbt_00003748), clearing cache entry
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FAIL
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Test term info query performance ... FAIL
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test_02_neuron_part_queries (src.test.test_query_performance.QueryPerformanceTest)
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Test neuron part overlap queries ... ok
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test_03_synaptic_queries (src.test.test_query_performance.QueryPerformanceTest)
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Traceback (most recent call last):
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File "/home/runner/work/VFBquery/VFBquery/src/test/test_query_performance.py", line 94, in test_01_term_info_queries
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self.assertLess(duration, self.THRESHOLD_MEDIUM, "term_info query exceeded threshold")
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AssertionError: 225.2647852897644 not less than 3.0 : term_info query exceeded threshold
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AssertionError: 17.631397008895874 not less than 3.0 : term_info query exceeded threshold
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----------------------------------------------------------------------
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Ran 6 tests in 233.725s
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Ran 6 tests in 29.451s
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FAILED (failures=1)
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VFBquery caching enabled: TTL=2160h (90 days), Memory=2048MB
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TERM INFO QUERIES
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================================================================================
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DEBUG: Cache lookup for FBbt_00003748: MISS
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ERROR: Owlery request failed: HTTPConnectionPool(host='owl.virtualflybrain.org', port=80): Read timed out. (read timeout=120)
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get_term_info (mushroom body): 225.2648s ✅
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get_term_info (mushroom body): 17.6314s ✅
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 1.0097s ✅
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NeuronsPartHere: 1.0982s ✅
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 0.7908s ✅
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NeuronsPresynapticHere: 0.6522s ✅
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NeuronsPostsynapticHere: 0.7603s ✅
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NeuronsSynaptic: 1.0791s ✅
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NeuronsPresynapticHere: 0.8780s ✅
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NeuronsPostsynapticHere: 1.0242s ✅
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 0.6528s ✅
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PartsOf: 0.6505s ✅
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SubclassesOf: 0.6324s ✅
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ComponentsOf: 0.8908s ✅
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PartsOf: 1.3769s ✅
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SubclassesOf: 0.8706s ✅
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================================================================================
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NEW QUERIES (2025)
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================================================================================
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NeuronClassesFasciculatingHere: 0.6419s ✅
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TractsNervesInnervatingHere: 0.7365s ✅
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LineageClonesIn: 0.6421s ✅
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ImagesNeurons: 0.6419s ✅
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NeuronClassesFasciculatingHere: 1.0393s ✅
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TractsNervesInnervatingHere: 0.8881s ✅
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LineageClonesIn: 0.8939s ✅
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ImagesNeurons: 0.8792s ✅
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 0.6476s ✅
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ListAllAvailableImages: 0.9001s ✅
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================================================================================
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PERFORMANCE TEST SUMMARY
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 1.292s
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Ran 1 test in 1.785s
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OK
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VFBquery caching enabled: TTL=2160h (90 days), Memory=2048MB
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 0.6403 seconds
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VFB_00101567 query took: 0.6516 seconds
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Total time for both queries: 1.2919 seconds
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Performance Level: 🟢 Excellent (< 1.5 seconds)
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FBbt_00003748 query took: 0.8927 seconds
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VFB_00101567 query took: 0.8925 seconds
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Total time for both queries: 1.7851 seconds
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Performance Level: 🟡 Good (1.5-3 seconds)
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==================================================
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Performance test completed successfully!
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```
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✅ **Test Status**: Performance tests completed
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### Test Statistics
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- **Total Tests**: 7
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- **Passed**: 4 ✅
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- **Failed**: 1 ❌
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- **Errors**: 2 ⚠️
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### Query Performance Details
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| Query | Duration | Status |
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|-------|----------|--------|
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| NeuronsPartHere | 1.0097s | ✅ Pass |
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| NeuronsSynaptic | 0.7908s | ✅ Pass |
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| NeuronsPresynapticHere | 0.6522s | ✅ Pass |
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| NeuronsPostsynapticHere | 0.7603s | ✅ Pass |
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| ComponentsOf | 0.6528s | ✅ Pass |
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| PartsOf | 0.6505s | ✅ Pass |
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| SubclassesOf | 0.6324s | ✅ Pass |
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| NeuronClassesFasciculatingHere | 0.6419s | ✅ Pass |
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| TractsNervesInnervatingHere | 0.7365s | ✅ Pass |
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| LineageClonesIn | 0.6421s | ✅ Pass |
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| ListAllAvailableImages | 0.6476s | ✅ Pass |
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⚠️ **Result**: Some performance thresholds exceeded or tests failed
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Please review the failed tests above. Common causes:
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- Network latency to VFB services
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- SOLR/Neo4j/Owlery server load
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- First-time cache population (expected to be slower)
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---
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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---
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*Last updated: 2025-11-09 03:12:08 UTC*
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*Last updated: 2025-11-10 03:14:54 UTC*

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