Merge pull request MetaCell#180 from MetaCell/feature/vite_refactoring

Refactored old webpack application in favour of a vite template

Author: ddelpiano

.github/workflows/run-eslint.yml

@@ -23,14 +23,14 @@ jobs:
     - name: Set up Node.js
       uses: actions/setup-node@v3
       with:
-        node-version: '18' # Adjust the Node.js version as needed
+        node-version: '20' # Adjust the Node.js version as needed
 
     # Step 3: Install dependencies using Yarn
     - name: Install dependencies
-      working-directory: applications/virtual-fly-brain/client
+      working-directory: applications/virtual-fly-brain/frontend
       run: yarn install
 
     # Step 4: Run ESLint
     - name: Run ESLint
-      working-directory: applications/virtual-fly-brain/client
-      run: yarn prebuild
+      working-directory: applications/virtual-fly-brain/frontend
+      run: yarn build

.github/workflows/run-tests.yml

@@ -31,6 +31,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         pip install -r requirements.txt
+        pip install -r test-requirements.txt
         pip install -e .
         cd virtual_fly_brain && mkdir www && cd www && touch index.html
 

applications/virtual-fly-brain/Dockerfile

@@ -21,6 +21,12 @@ RUN apt-get update && apt-get install -y \
     git \
     && rm -rf /var/lib/apt/lists/*
 
+RUN apt-get remove -y nodejs npm || true
+
+RUN curl -fsSL https://deb.nodesource.com/setup_20.x | bash - && \
+    apt-get install -y nodejs && \
+    node --version
+
 RUN curl -sS https://dl.yarnpkg.com/debian/pubkey.gpg | apt-key add - && \
     echo "deb https://dl.yarnpkg.com/debian/ stable main" | tee /etc/apt/sources.list.d/yarn.list && \
     apt-get update && \
@@ -30,9 +36,9 @@ RUN curl -sS https://dl.yarnpkg.com/debian/pubkey.gpg | apt-key add - && \
 # Set up virtual display for OpenGL
 ENV DISPLAY=:99
 
-COPY client ${BUILDDIR}
+COPY frontend ${BUILDDIR}
 WORKDIR ${BUILDDIR}
-RUN export VFB_DOMAIN="https://"${DOMAIN}
+ENV VFB_DOMAIN=https://${DOMAIN}
 RUN yarn install
 RUN yarn run build
 

applications/virtual-fly-brain/backend/requirements.txt

@@ -12,4 +12,8 @@ Flask == 2.2.2
 psycopg2-binary
 gunicorn==20.1.0
 flask_cors==3.0.10
-vfbquery==0.2.12
+dataclasses_json >= 0.5.7
+dacite >= 1.6.0
+pandas >= 1.0.0
+numpy >= 1.19.0
+git+https://github.com/VirtualFlyBrain/VFBquery.git