Fix remaining use of Strings for scales (should be symbols now)

Author: VEZY

docs/src/multiscale/multiscale_coupling.md

@@ -68,7 +68,7 @@ Conceptually :
 
 ```julia
  PlantSimEngine.dep(m::ParentModel) = (
-    name_provided_in_the_mapping=AbstractHardDependencyModel => ["Organ_Name_1",],
+    name_provided_in_the_mapping=AbstractHardDependencyModel => [:Organ_Name_1],
 )
 ```
 

docs/src/multiscale/multiscale_example_3.md

@@ -324,7 +324,7 @@ This hard dependency is in fact multiscale, since both models operate at differe
 Compared to the single-scale equivalent, the multi-scale declaration additionally requires mapping the scale:
 
 ```julia
-PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel=>["Root"],)
+PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel=>[:Root],)
 ```
 
 The `status` argument [`run!`](@ref) function of the root growth decision model only contains variables from the "Plant" scale, or explicitely mapped to this scale, which isn't the case for the root growth's variables. To make use of the root growth model's variables, we need to recover the [`status`](@ref) at the "Root" scale. It is accessible from the `extra` argument in [`run!`](@ref)'s signature. 
@@ -362,7 +362,7 @@ PlantSimEngine.inputs_(::ToyRootGrowthDecisionModel) =
 
 PlantSimEngine.outputs_(::ToyRootGrowthDecisionModel) = NamedTuple()
 
-PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel=>["Root"],)
+PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel=>[:Root],)
 
 # "status" is at the "Plant" scale
 function PlantSimEngine.run!(m::ToyRootGrowthDecisionModel, models, status, meteo, constants=nothing, extra=nothing)
@@ -500,4 +500,4 @@ We now have a plant with two different growth directions. Roots are added at the
 
 Of course, there are still several design issues with this implementation. It is as utterly unrealistic as the previous one, and doesn't even consume water. Some condition checking is a little ad hoc and could be made more robust. More sanity checks could be added, and the model and variable names could definitely be made more clear.
 
-But once again, this example is only made to illustrate what is possible with this framework, and doesn't strive for ecophysiological consistency. And the approach can be made increasingly more complex by refining models and simulation parameters, and feeding in new information about your plant, and ramp up to realistic, production-ready and predictive simulations.
+But once again, this example is only made to illustrate what is possible with this framework, and doesn't strive for ecophysiological consistency. And the approach can be made increasingly more complex by refining models and simulation parameters, and feeding in new information about your plant, and ramp up to realistic, production-ready and predictive simulations.

examples/ToyMultiScalePlantTutorial/ToyPlantSimulation3.jl

@@ -140,7 +140,7 @@ PlantSimEngine.inputs_(::ToyRootGrowthDecisionModel) =
 
 PlantSimEngine.outputs_(::ToyRootGrowthDecisionModel) = NamedTuple()
 
-PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel => ["Root"],)
+PlantSimEngine.dep(::ToyRootGrowthDecisionModel) = (root_growth=AbstractRoot_GrowthModel => [:Root],)
 
 function PlantSimEngine.run!(m::ToyRootGrowthDecisionModel, models, status, meteo, constants=nothing, extra=nothing)
 
@@ -248,4 +248,4 @@ outs = run!(mtg, mapping, meteo_day)
 mtg
 
 
-length(MultiScaleTreeGraph.traverse(mtg, x -> x, symbol=:Leaf))
+length(MultiScaleTreeGraph.traverse(mtg, x -> x, symbol=:Leaf))

test/test-corner-cases.jl

@@ -94,7 +94,7 @@ function PlantSimEngine.outputs_(::Msg3LvlScaleEchelle2Model)
     (e2=-Inf, f2=-Inf)
 end
 
-PlantSimEngine.dep(::Msg3LvlScaleEchelle2Model) = (Msg3Lvl_echelle3=AbstractMsg3Lvl_Echelle3Model => ("E3",),)
+PlantSimEngine.dep(::Msg3LvlScaleEchelle2Model) = (Msg3Lvl_echelle3=AbstractMsg3Lvl_Echelle3Model => (:E3,),)
 function PlantSimEngine.run!(::Msg3LvlScaleEchelle2Model, models, status, meteo, constants=nothing, extra_args=nothing)
     status_E3 = extra_args.statuses["E3"][1]
     run!(extra_args.models["E3"].Msg3Lvl_echelle3, models, status_E3, meteo, constants)
@@ -116,7 +116,7 @@ function PlantSimEngine.outputs_(::Msg3LvlScaleEchelle1Model)
     (e1=-Inf, f1=-Inf)#, e3 = -Inf)
 end
 
-PlantSimEngine.dep(::Msg3LvlScaleEchelle1Model) = (Msg3Lvl_echelle2=AbstractMsg3Lvl_Echelle2Model => ("E2",),)
+PlantSimEngine.dep(::Msg3LvlScaleEchelle1Model) = (Msg3Lvl_echelle2=AbstractMsg3Lvl_Echelle2Model => (:E2,),)
 function PlantSimEngine.run!(::Msg3LvlScaleEchelle1Model, models, status, meteo, constants=nothing, extra_args=nothing)
 
     status_E2 = extra_args.statuses["E2"][1]
@@ -157,7 +157,7 @@ function PlantSimEngine.outputs_(::Msg3LvlScaleAvalModel)
     (g=-Inf,)
 end
 
-PlantSimEngine.dep(::Msg3LvlScaleAvalModel) = (Msg3Lvl_aval2=AbstractMsg3Lvl_Aval2Model => ("E2",),)
+PlantSimEngine.dep(::Msg3LvlScaleAvalModel) = (Msg3Lvl_aval2=AbstractMsg3Lvl_Aval2Model => (:E2,),)
 
 function PlantSimEngine.run!(::Msg3LvlScaleAvalModel, models, status, meteo, constants=nothing, extra_args=nothing)
 
@@ -275,7 +275,7 @@ function PlantSimEngine.outputs_(::HardDepSameScaleEchelle1Model)
     (e1=-Inf, f1=-Inf)
 end
 
-#PlantSimEngine.dep(::HardDepSameScaleEchelle1Model) = (hard_dep_same_scale_echelle3=AbstractHard_Dep_Same_Scale_Echelle3Model => ("E3",),)
+#PlantSimEngine.dep(::HardDepSameScaleEchelle1Model) = (hard_dep_same_scale_echelle3=AbstractHard_Dep_Same_Scale_Echelle3Model => (:E3,),)
 
 # exta_args = sim_object
 function PlantSimEngine.run!(::HardDepSameScaleEchelle1Model, models, status, meteo, constants=nothing, sim_object=nothing)
@@ -299,7 +299,7 @@ function PlantSimEngine.outputs_(::HardDepSameScaleEchelle1bisModel)
     (e2=-Inf, f2=-Inf)
 end
 
-PlantSimEngine.dep(::HardDepSameScaleEchelle1bisModel) = (hard_dep_same_scale_echelle3=AbstractHard_Dep_Same_Scale_Echelle3Model => ("E3",),)
+PlantSimEngine.dep(::HardDepSameScaleEchelle1bisModel) = (hard_dep_same_scale_echelle3=AbstractHard_Dep_Same_Scale_Echelle3Model => (:E3,),)
 
 # exta_args = sim_object
 function PlantSimEngine.run!(::HardDepSameScaleEchelle1bisModel, models, status, meteo, constants=nothing, sim_object=nothing)
@@ -417,7 +417,7 @@ function PlantSimEngine.outputs_(::SingleModelScale3)
     (out=-Inf, out3=-Inf)
 end
 
-PlantSimEngine.dep(::SingleModelScale1) = (single_model_multiple_scales=AbstractSingle_Model_Multiple_ScalesModel => ("E2bis", "E2"),)
+PlantSimEngine.dep(::SingleModelScale1) = (single_model_multiple_scales=AbstractSingle_Model_Multiple_ScalesModel => (:E2bis, :E2),)
 
 # extra_args = sim_object
 function PlantSimEngine.run!(::SingleModelScale1, models, status, meteo, constants=nothing, sim_object=nothing)