modelBasedQCPlots missing protein name

[Radio-Controlled]

When running the modelBasedQCPlots function, the output is missing the protein names in the title, so eg instead of "Normal Q−Q Plot ( A2AAJ9 )" it now says "Normal Q−Q Plot ( )". The plots themselves are still the same however.

[mstaniak]

Hi,
thanks for reporting, I'll check and fix this problem soon.

[Radio-Controlled]

Thank you for looking into it! As an aside, I have also been having some issues with using MSstatsPTM, but here I'm not sure if it's an issue with the code or with my implementation. Is there a forum or other avenue where I could ask for feedback regarding this?

[mstaniak]

Regarding MSstatsPTM, please either use the google group https://groups.google.com/u/2/g/msstats or leave an issue at Vitek-Lab/MSstatsPTM.

[mstaniak]

Hi,

apologies for a long delay, I wasn't able to reproduce the issue. Is this still occurring? What is the input which.Protein parameter?