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Add description in DIANN converter on DIANN 2.0 workaround (#107)
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R/converters_DIANNtoMSstatsFormat.R

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#' Import Diann files
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#'
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#' @inheritParams .sharedParametersAmongConverters
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#' @param input name of MSstats input report from Diann, which includes feature-level data.
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#' @param input name of MSstats input report from Diann, which includes fragment-level data.
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#' Output fragment data with --export-quant flag in DIA-NN 2.0
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#' @param annotation name of 'annotation.txt' data which includes Condition, BioReplicate, Run.
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#' @param MBR True if analysis was done with match between runs
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#' @param global_qvalue_cutoff The qvalue cutoff for the Q.Value column, i.e.
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#' @export
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#'
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#' @examples
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#' # See https://github.com/vdemichev/DiaNN/discussions/1525 for workaround for DIANN 2.0
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#' input_file_path = system.file("tinytest/raw_data/DIANN/diann_input.tsv",
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#' package="MSstatsConvert")
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#' annotation_file_path = system.file("tinytest/raw_data/DIANN/annotation.csv",

man/DIANNtoMSstatsFormat.Rd

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