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NAMESPACE
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81 lines (80 loc) · 2.41 KB
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# Generated by roxygen2: do not edit by hand
export(DIANNtoMSstatsLiPFormat)
export(PCAPlotLiP)
export(ResistanceBarcodePlotLiP)
export(SkylinetoMSstatsLiPFormat)
export(SpectronauttoMSstatsLiPFormat)
export(StructuralBarcodePlotLiP)
export(annotSite)
export(calculateProteolyticResistance)
export(calculateTrypticity)
export(correlationPlotLiP)
export(dataProcessPlotsLiP)
export(dataSummarizationLiP)
export(groupComparisonLiP)
export(groupComparisonPlotsLiP)
export(locateMod)
export(locatePTM)
export(tidyFasta)
export(trypticHistogramLiP)
import(ggplot2)
import(tibble)
import(tidyverse)
importFrom(Biostrings,readAAStringSet)
importFrom(MSstats,DIANNtoMSstatsFormat)
importFrom(MSstats,MSstatsContrastMatrix)
importFrom(MSstats,SkylinetoMSstatsFormat)
importFrom(MSstats,SpectronauttoMSstatsFormat)
importFrom(MSstats,groupComparison)
importFrom(MSstatsConvert,MSstatsLogsSettings)
importFrom(MSstatsPTM,dataProcessPlotsPTM)
importFrom(MSstatsPTM,dataSummarizationPTM)
importFrom(MSstatsPTM,groupComparisonPTM)
importFrom(MSstatsPTM,groupComparisonPlotsPTM)
importFrom(Rcpp,sourceCpp)
importFrom(checkmate,assertChoice)
importFrom(checkmate,assertLogical)
importFrom(checkmate,assertNumeric)
importFrom(data.table,.I)
importFrom(data.table,.N)
importFrom(data.table,`:=`)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setnames)
importFrom(data.table,tstrsplit)
importFrom(dplyr,bind_rows)
importFrom(dplyr,count)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,ungroup)
importFrom(factoextra,fviz_eig)
importFrom(factoextra,fviz_pca_biplot)
importFrom(factoextra,fviz_pca_ind)
importFrom(factoextra,fviz_pca_var)
importFrom(ggpubr,ggpar)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(gridExtra,grid.arrange)
importFrom(plotly,add_trace)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,style)
importFrom(plotly,subplot)
importFrom(purrr,map_int)
importFrom(scales,percent)
importFrom(stats,cor)
importFrom(stats,prcomp)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(stringr,str_locate_all)
importFrom(stringr,str_match)
importFrom(stringr,str_split)
importFrom(tidyr,pivot_wider)
useDynLib(MSstatsLiP, .registration=TRUE)