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1 parent 85297dc commit ef3f5f6Copy full SHA for ef3f5f6
1 file changed
partinet/__init__.py
@@ -82,7 +82,7 @@ def star(labels, images, output,conf):
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@click.option("--source", type=str, required=True, help="Path to Raw micrographs")
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@click.option('--project', type=str, required=True, help='save denoised micrographs to project/denoised', show_default=True)
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@click.option('--num_workers', type=int, default=None, help='Number of workers for denoising micrographs')
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-@click.option('--format', type=str, type=click.Choice(["png", "jpg", "mrc"], case_sensitive=True), default="png",show_default=True, help='Output format of denoised micrographs')
+@click.option('--format', type=click.Choice(["png", "jpg", "mrc"], case_sensitive=True), default="png",show_default=True, help='Output format of denoised micrographs')
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def denoise(source, project, num_workers,format):
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click.echo("Denoising micrographs...")
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import partinet.process_utils.pooled_denoise_proc
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