Code to reproduce the analyses and figures of LongAllele:
Xu Z, Wang K. LongAllele: a joint inference framework for allele-specific analysis on long-read bulk and single-cell RNA sequencing. bioRxiv 2026. https://www.biorxiv.org/content/10.64898/2026.05.05.722992v2
Method / pipeline code lives in the main package: WGLab/LongAllele.
Each figures/FigureN/ folder is self-contained — its data/ holds the inputs
and run.R regenerates the figure:
cd figures/Figure2
Rscript run.R