Merge pull request #43 from jpthiele/precommit

jpthiele · web-flow · commit 117c6df8159d · 2024-11-26T13:06:57.000+01:00
[CI/Infra] Add pre-commit to repo
diff --git a/.JuliaFormatter.toml b/.JuliaFormatter.toml
@@ -4,4 +4,4 @@ format_markdown = true
 import_to_using = false
 pipe_to_function_call = false
 short_to_long_function_def = false
-always_use_return = false
+always_use_return = false
diff --git a/.codespellrc b/.codespellrc
@@ -1,2 +1,2 @@
 [codespell]
-ignore-words-list = missings,rcall,linke,fo,COO,alledges
+ignore-words-list = missings,rcall,linke,fo,coo,alledges
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -76,4 +76,4 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
-          
+          
diff --git a/.github/workflows/pre-commit.yml b/.github/workflows/pre-commit.yml
@@ -0,0 +1,21 @@
+name: pre-commit
+
+on:
+  pull_request:
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: julia-actions/setup-julia@v2
+      with:
+        version: 1.11
+    - run: |
+          julia --project=@runic -e '
+            using Pkg
+            Pkg.add("Runic")'
+      env:
+        PYTHON: ""
+    - uses: actions/setup-python@v5
+    - uses: pre-commit/action@v3.0.1
diff --git a/.gitignore b/.gitignore
@@ -4,4 +4,3 @@ docs/build
 Manifest*.toml
 .repl_history
 quarry
-
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,21 @@
+repos:
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v5.0.0
+  hooks:
+  - id: check-added-large-files
+    args: [--maxkb=8192]
+  - id: check-merge-conflict
+  - id: check-toml
+  - id: check-yaml
+    args: [--allow-multiple-documents]
+  - id: end-of-file-fixer
+  - id: no-commit-to-branch
+    args: [--branch,master]
+- repo: https://github.com/gitleaks/gitleaks
+  rev: v8.16.3
+  hooks:
+  - id: gitleaks
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.2.4
+  hooks:
+  - id: codespell
diff --git a/.zenodo.json b/.zenodo.json
@@ -20,4 +20,3 @@
     "license": "MIT",
     "upload_type": "software"
 }
-
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -56,4 +56,3 @@ Introducd 1.9 extensions
 
 - Implement AbstractSparseMatrixCSC interface.
 - Remove extension of LinearSolve methodsa
-
diff --git a/docs/src/linearsolve.md b/docs/src/linearsolve.md
@@ -149,4 +149,3 @@ y = LinearSolve.solve(LinearProblem(A, b), KrylovJL_CG();
                       Pl = ILUZero.ilu0(SparseMatrixCSC(A))).u
 sum(y)
 ```
-
diff --git a/ext/ExtendableSparseIncompleteLUExt.jl b/ext/ExtendableSparseIncompleteLUExt.jl
@@ -42,4 +42,3 @@ function update!(precon::ILUTPreconditioner)
 end
 
 end
-
diff --git a/ext/ExtendableSparseLinearSolveExt.jl b/ext/ExtendableSparseLinearSolveExt.jl
@@ -23,4 +23,3 @@ end
 (b::LinearSolvePreconBuilder)(A::AbstractSparseMatrixCSC,p) = (LinearSolvePrecon(A,b.method), LinearAlgebra.I)
 
 end
-
diff --git a/ext/ExtendableSparsePardisoExt.jl b/ext/ExtendableSparsePardisoExt.jl
@@ -109,4 +109,3 @@ end
 end
 
 end
-
diff --git a/src/compat.jl b/src/compat.jl
@@ -15,4 +15,3 @@ macro public(ex)
         nothing
     end
 end
-
diff --git a/src/experimental/Experimental.jl b/src/experimental/Experimental.jl
@@ -40,4 +40,3 @@ export     reorderlinsys, nnz_noflush
 
 
 end
-
diff --git a/src/experimental/ExtendableSparseMatrixParallel/ilu_Al-Kurdi_Mittal.jl b/src/experimental/ExtendableSparseMatrixParallel/ilu_Al-Kurdi_Mittal.jl
@@ -264,4 +264,4 @@ end
 
 
 
-#end
+#end
diff --git a/src/experimental/ExtendableSparseMatrixParallel/iluam.jl b/src/experimental/ExtendableSparseMatrixParallel/iluam.jl
@@ -32,4 +32,3 @@ end
 
 allow_views(::ILUAMPreconditioner)=true
 allow_views(::Type{ILUAMPreconditioner})=true
-
diff --git a/src/experimental/ExtendableSparseMatrixParallel/pilu_Al-Kurdi_Mittal.jl b/src/experimental/ExtendableSparseMatrixParallel/pilu_Al-Kurdi_Mittal.jl
@@ -348,4 +348,4 @@ function nnz(ilu::PILUAMPrecon{T,N}) where {T,N<:Integer}
     length(ilu.nzval)
 end
 
-#end
+#end
diff --git a/src/experimental/ExtendableSparseMatrixParallel/piluam.jl b/src/experimental/ExtendableSparseMatrixParallel/piluam.jl
@@ -33,4 +33,3 @@ end
 
 allow_views(::PILUAMPreconditioner)=true
 allow_views(::Type{PILUAMPreconditioner})=true
-
diff --git a/src/experimental/ExtendableSparseMatrixParallel/struct_flush.jl b/src/experimental/ExtendableSparseMatrixParallel/struct_flush.jl
@@ -264,10 +264,3 @@ function dense_flush_removezeros!(
 	)
 	
 end
-
-
-
-
-
-
-
diff --git a/src/experimental/ExtendableSparseMatrixParallel/supersparse.jl b/src/experimental/ExtendableSparseMatrixParallel/supersparse.jl
@@ -785,14 +785,3 @@ end
 function form(x)
 	[minimum(x), mean(x), maximum(x)]
 end
-
-
-
-
-
-
-
-
-
-
-
diff --git a/src/factorizations/iluzero.jl b/src/factorizations/iluzero.jl
@@ -96,5 +96,3 @@ function LinearAlgebra.ldiv!(u,p::PointBlockILUZeroPreconditioner,v)
                         )
     u
 end
-
-
diff --git a/src/factorizations/parallel_ilu0.jl b/src/factorizations/parallel_ilu0.jl
@@ -215,4 +215,3 @@ function update!(p::ParallelILU0Preconditioner)
     end
     p
 end
-
diff --git a/src/factorizations/umfpack_lu.jl b/src/factorizations/umfpack_lu.jl
@@ -25,4 +25,3 @@ function update!(lufact::LUFactorization)
     end
     lufact
 end
-
diff --git a/src/matrix/extendable.jl b/src/matrix/extendable.jl
@@ -316,5 +316,3 @@ function pointblock(A0::ExtendableSparseMatrixCSC{Tv,Ti},blocksize) where {Tv,Ti
     end
     flush!(Ab)
 end
-
-
diff --git a/src/matrix/genericextendablesparsematrixcsc.jl b/src/matrix/genericextendablesparsematrixcsc.jl
@@ -90,4 +90,3 @@ function updateindex!(ext::GenericExtendableSparseMatrixCSC,
         updateindex!(ext.xmatrix,op,v,i,j)
     end
 end
-

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`[codespell]`
`2`		`-ignore-words-list = missings,rcall,linke,fo,COO,alledges`
	`2`	`+ignore-words-list = missings,rcall,linke,fo,coo,alledges`
Original file line number	Diff line number	Diff line change
`@@ -20,4 +20,3 @@`
`20`	`20`	`"license": "MIT",`
`21`	`21`	`"upload_type": "software"`
`22`	`22`	`}`
`23`		`-`
Original file line number	Diff line number	Diff line change
`@@ -56,4 +56,3 @@ Introducd 1.9 extensions`
`56`	`56`
`57`	`57`	`- Implement AbstractSparseMatrixCSC interface.`
`58`	`58`	`- Remove extension of LinearSolve methodsa`
`59`		`-`
-Original file line number
+Diff line change
                       Pl = ILUZero.ilu0(SparseMatrixCSC(A))).u
 sum(y)
 ```
+-
Original file line number	Diff line number	Diff line change
`@@ -42,4 +42,3 @@ function update!(precon::ILUTPreconditioner)`
`42`	`42`	`end`
`43`	`43`
`44`	`44`	`end`
`45`		`-`