Skip to content

[Feature Request] Allow conversion to columns other than hgnc symbol  #63

@Nelson-Gon

Description

@Nelson-Gon

Prerequisites

  • Have you read Feedback and follow the guide?
    • make sure your are using the latest release version
    • read the documents
    • google your quesion/issue

Describe you issue

  • Make a reproducible example (e.g. 1)
  • your code should contain comments to describe the problem (e.g. what expected and actually happened?)

Ask in right place

  • for bugs or feature requests, post here (github issue)
  • for questions, please post to Bioconductor or Biostars with tag DOSE

Hello,

I was looking at setReadable and was happy to note that this exists and works well for conversion to gene symbols. I think sometimes it may be necessary to convert to an ensembl ID instead and it would be great if there were support for this.

Looking at

gn <- EXTID2NAME(OrgDb, genes, keyType)
, it seems EXTID2NAME only currently does keytype -> gene symbol conversion.

I envision this would consist of a switch and perhaps an extra argument requesting for the target conversion.

Thank you,

NelsonGon

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions