I would like some information on using gene lists with ranking that does not come from expression data studies, like positive ranking, where the higher the score, the more significant the association with the phenotype. In particular, I would like to know if this kind of ranking works well with gsePathway. I noticed the argument scoreType, but I have not found a detailed documentation on its use. Thanks!
I would like some information on using gene lists with ranking that does not come from expression data studies, like positive ranking, where the higher the score, the more significant the association with the phenotype. In particular, I would like to know if this kind of ranking works well with gsePathway. I noticed the argument scoreType, but I have not found a detailed documentation on its use. Thanks!