alectrolytes.github.io/pubmed-popularity-search.html at master · alectrolytes/alectrolytes.github.io · GitHub

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---
layout: default
title: Team Nexus - PubMed Popularity Search
---

  <link rel="stylesheet" href="/css/popularity.css"/>
  <meta name="description" content="Search and sort pubmed articles by popularity."/>
</head>
<body>
  <!-- Facebook Like Script -->
  <div id="fb-root"></div>
  <script>(function(d, s, id) {
    var js, fjs = d.getElementsByTagName(s)[0];
    if (d.getElementById(id)) return;
    js = d.createElement(s); js.id = id;
    js.src = "//connect.facebook.net/en_US/sdk.js#xfbml=1&version=v2.5";
    fjs.parentNode.insertBefore(js, fjs);
  }(document, 'script', 'facebook-jssdk'));</script>

  <!-- Google +1 Script -->
  <script src="https://apis.google.com/js/platform.js" async defer></script>

  <!-- background tint-->
  <div class="overlay"></div>

  <!-- awesome zoom box navbar! -->
  <nav class="navbar navbar-default navbar-fixed-top" role="navigation">
    <div class="container">
      <div id="projects-btn" class="box">
        Projects
        <span class="top"></span>
        <span class="right"></span>
        <span class="bottom"></span>
        <span class="left"></span>
        <a href="http://teamnex.us/#projects" class="boxlink"></a>
      </div>
    </div>
  </nav>

  <!-- Google +1 and Facebook Like buttons -->
  <div class="social">
    <span class="fb-like" data-href="http://teamnex.us/nlm-citation-machine" data-layout="button_count" data-action="like" data-show-faces="false" data-share="false" style="vertical-align:top !important"></span>
    <span class="g-plusone" data-size="medium" data-annotation="bubble"></span>
  </div>

  <!-- PubMed Popularity Search -->
  <div class="title">PubMed Popularity Search</div>
  <form class="search-form row" onsubmit="return false;">
    <div class="form-group col-md-10">
      <input type="text" id="query" class="form-control" placeholder="Enter search terms">
    </div>
    <div class="col-md-2">
      <button type="button" id="search-btn" class="btn" onclick="SearchPubmed()">Search!</button>
    </div>
  </form>
  <div class="article-list">

  <script>
    var search_terms;
    var article_string;
    var article_list;
    var article_id;
    var search_results;
    var id_list;
    var article_results
    var append_html = "";

    function Get(yourUrl){
      var Httpreq = new XMLHttpRequest();
      Httpreq.open("GET",yourUrl,false);
      Httpreq.send(null);
      return Httpreq.responseText;
    }

    function PubMedSearch(search_terms){
      console.log('Searching...')
      var pubmed_search_results = JSON.parse(Get('https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&retmode=json&retmax=400&sort=relevance&term=' + search_terms));
      return pubmed_search_results;
    }

    function ArticleSearch(pubmed_id){
      var article_search_results = JSON.parse(Get('https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&rettype=abstract&id=' + pubmed_id));
      return article_search_results;
    }

    function compare(a,b) {
      if (a.article_citations < b.article_citations)
        return 1;
      if (a.article_citations > b.article_citations)
        return -1;
      return 0;
    }

    function SearchPubmed() {
      if($('.article-link').length) {
        $(".article-link").show("drop", {direction:"up"}, 600, function(){$(this).remove()});
      }

      search_terms = encodeURIComponent(document.getElementById('query').value);
      article_string = "";
      article_list = [];
      append_html = "";

      search_results = PubMedSearch(search_terms);
      id_list = search_results.esearchresult.idlist;

      for (id in id_list) {
        article_string += id_list[id] + "+";
      }

      article_results = ArticleSearch(article_string);

      for (id in id_list) {
        citation_count = article_results.result[id_list[id]].pmcrefcount;
        if (citation_count != ''){
          article_list.push({
            article_id: id_list[id],
            article_citations: citation_count,
            article_title: article_results.result[id_list[id]].title,
            article_author: article_results.result[id_list[id]].sortfirstauthor,
            article_journal: article_results.result[id_list[id]].fulljournalname,
            article_pubdate: article_results.result[id_list[id]].pubdate
          });
        }
      }

      article_list.sort(compare);
      article_list.length = 20;

      for (article in article_list) {
        append_html += '<a class="article-link" href="https://www.ncbi.nlm.nih.gov/pubmed/' + article_list[article].article_id + '">'
        append_html += '<div class="article container-fluid" style="display: none">';
        append_html += '<div class="row">';
        append_html += '<div class="article-title" style="font-weight: bold; padding: 1%">' + article_list[article].article_title + '</div></div>';
        append_html += '<div class="row">';
        if (article_list[article].article_title.length > 180) {
          article_list[article].article_title.length = 180;
          append_html += '<div class="article-id col-sm-2">' + article_list[article].article_id + '...</div>';
        } else {
          append_html += '<div class="article-id col-sm-2">' + article_list[article].article_id + '</div>';
        }
        append_html += '<div class="article-author col-sm-2">' + article_list[article].article_author + '</div>';
        append_html += '<div class="article-journal col-sm-4">' + article_list[article].article_journal + '</div>';
        append_html += '<div class="article-pubdate col-sm-2">' + article_list[article].article_pubdate + '</div>';
        append_html += '<div class="article-citations col-sm-2">cited ' + article_list[article].article_citations + ' times</div></div></div></a>';

        // $article = $("<div>").addClass("article container-fluid").css('display', 'none');
        // $article_title = $("<div>").addClass("article-title").text(article_list[article].article_title);
        // $article_id = $("<div>").addClass("article-id col-sm").text(article_list[article].article_id);
        // $article_author = $("<div>").addClass("article-author col-sm-2").text(article_list[article].article_author);
        // $article_journal = $("<div>").addClass("article-journal col-sm-4").text(article_list[article].article_journal);
        // $article_pubdate = $("<div>").addClass("article-pubdate col-sm-2").text(article_list[article].article_pubdate);
        // $article_citations = $("<div>").addClass("article-citations col-sm").text(article_list[article].article_citations);
        //
        // $(".article-list").append($article);
        // $(".article").last().append($("<div>").addClass("row"));
        // $(".row").last().append($article_title);
        // $(".article").last().append($("<div>").addClass("row"));
        // $(".row").last().append($article_id);
        // $(".row").last().append($article_author);
        // $(".row").last().append($article_author);
        // $(".row").last().append($article_pubdate);
        // $(".row").last().append($article_citations);
      }
      $(".article-list").append(append_html);
      $(".article").show("drop", {direction:"up"}, 600);
    }

    $(document).ready(function(){
      $("#option1").click(function(){
          $(this).button('toggle');
      });
      $("#option2").click(function(){
          $(this).button('toggle');
      });
      $("#option3").click(function(){
          $(this).button('toggle');
      });
    });
    $('.search-form').keypress(function(event) {
      if (event.keyCode == 13 || event.which == 13) {
        SearchPubmed();
      }
    });

  </script>