CRISPResso2parser.py

[amarcog]

These Python parser scripts summarize and genotype CRISPResso2 analysed clones including those edited with multiple HDR
templates. They extract and join relevant data from the results folders generated by CRISResso2 per each sample. (K. Clement et al. Nat. Biotechnology 2019)(https://github.com/pinellolab/CRISPResso2/) (http://crispresso2.pinellolab.org/).

• CRISPResso2parser.py scripts summarize and allow easier visualization of results coming from CRISPResso2 analysis.
• CRISPResso2parser_clonal.py script automatically identifies pure clones and determines their genotype.
• CRISPResso2parser_clonal-HDR.py script automatically identifies pure clones edited with multiple HDR templates.

On balance, CRISPResso2parser.py scripts further expands the CRISPResso2 applications for high throughput screening of genome edited clonal lines.

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This discussion was created from the release CRISPResso2parser.py.