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Bump version to 0.3.0-beta.2
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.claude-plugin/plugin.json

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{
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"name": "encode-toolkit",
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"description": "20 ENCODE API tools + 48 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.",
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"version": "0.3.0-beta.1",
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"version": "0.3.0-beta.2",
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"author": {
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"name": "Dr. Alex M. Mawla, PhD",
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"email": "ammawla@ucdavis.edu"

package.json

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{
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"name": "encode-toolkit",
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"version": "0.3.0-beta.1",
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"version": "0.3.0-beta.2",
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"description": "ENCODE Toolkit — Genomics research infrastructure with 20 MCP tools, 47 skills, 14 database integrations, and 7 pipelines for Claude Code",
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"main": "index.js",
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"bin": {

pyproject.toml

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[project]
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name = "encode-toolkit"
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version = "0.3.0b1"
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version = "0.3.0b2"
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description = "MCP server for querying and downloading ENCODE Project genomics data directly from Claude"
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readme = "README.md"
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license = "LicenseRef-Noncommercial"

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