diff --git a/buildSrc/src/main/groovy/org/apache/beam/gradle/BeamModulePlugin.groovy b/buildSrc/src/main/groovy/org/apache/beam/gradle/BeamModulePlugin.groovy
index 525ab56a5386..a5b3e34571ac 100644
--- a/buildSrc/src/main/groovy/org/apache/beam/gradle/BeamModulePlugin.groovy
+++ b/buildSrc/src/main/groovy/org/apache/beam/gradle/BeamModulePlugin.groovy
@@ -1546,22 +1546,15 @@ class BeamModulePlugin implements Plugin<Project> {
             "PreferJavaTimeOverload",
             "NonCanonicalType",
             "Slf4jSignOnlyFormat",
-            "ThreadPriorityCheck",
             "UndefinedEquals",
             "UnescapedEntity",
             "UnrecognisedJavadocTag",
             // errorprone 3.2.0+ checks
             "DirectInvocationOnMock",
-            "Finalize",
             "JUnitIncompatibleType",
             "MockNotUsedInProduction",
-            "NullableTypeParameter",
             "NullableWildcard",
             "SuperCallToObjectMethod",
-            // intended suppressions emerged in newer protobuf versions
-            // For backward compatibility. Public method checked in before this check impl
-            // Possible use in interface subclasses
-            "ClassInitializationDeadlock",
             // for encoding efficiency and backward compatibility
             "EnumOrdinal",
             // widely used in non-public methods
diff --git a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleReader.java b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleReader.java
index 158c242262ac..a306a3f03c97 100644
--- a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleReader.java
+++ b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleReader.java
@@ -77,6 +77,7 @@ public void close() {
   }
 
   @Override
+  @SuppressWarnings("Finalize")
   protected void finalize() {
     destroySynchronized();
   }
diff --git a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleWriter.java b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleWriter.java
index 0a56281991a6..0e9a0c237120 100644
--- a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleWriter.java
+++ b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/ApplianceShuffleWriter.java
@@ -55,6 +55,7 @@ public ApplianceShuffleWriter(
   }
 
   @Override
+  @SuppressWarnings("Finalize")
   protected void finalize() {
     destroy();
   }
diff --git a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/BatchDataflowWorker.java b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/BatchDataflowWorker.java
index feaf5e741396..ebb0b5ff9977 100644
--- a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/BatchDataflowWorker.java
+++ b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/BatchDataflowWorker.java
@@ -180,6 +180,7 @@ private static DebugCapture.Manager initializeAndStartDebugCaptureManager(
     return result;
   }
 
+  @SuppressWarnings("ThreadPriorityCheck")
   private static Thread startMemoryMonitorThread(MemoryMonitor memoryMonitor) {
     Thread result = new Thread(memoryMonitor);
     result.setDaemon(true);
diff --git a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/windmill/WindmillServerBase.java b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/windmill/WindmillServerBase.java
index 20ea634a65e7..da439311004e 100644
--- a/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/windmill/WindmillServerBase.java
+++ b/runners/google-cloud-dataflow-java/worker/src/main/java/org/apache/beam/runners/dataflow/worker/windmill/WindmillServerBase.java
@@ -45,6 +45,7 @@ protected WindmillServerBase(String host) {
   }
 
   @Override
+  @SuppressWarnings("Finalize")
   protected void finalize() {
     destroy(nativePointer);
   }
diff --git a/sdks/java/core/src/main/java/org/apache/beam/sdk/io/UnboundedSource.java b/sdks/java/core/src/main/java/org/apache/beam/sdk/io/UnboundedSource.java
index f38715b37e1e..0e72854abbf9 100644
--- a/sdks/java/core/src/main/java/org/apache/beam/sdk/io/UnboundedSource.java
+++ b/sdks/java/core/src/main/java/org/apache/beam/sdk/io/UnboundedSource.java
@@ -145,6 +145,7 @@ public interface CheckpointMark {
      */
     void finalizeCheckpoint() throws IOException;
 
+    @SuppressWarnings("ClassInitializationDeadlock")
     NoopCheckpointMark NOOP_CHECKPOINT_MARK = new NoopCheckpointMark();
 
     /** A checkpoint mark that does nothing when finalized. */
diff --git a/sdks/java/core/src/main/java/org/apache/beam/sdk/transforms/reflect/DoFnSignature.java b/sdks/java/core/src/main/java/org/apache/beam/sdk/transforms/reflect/DoFnSignature.java
index c8315e140b50..83c2a67655bd 100644
--- a/sdks/java/core/src/main/java/org/apache/beam/sdk/transforms/reflect/DoFnSignature.java
+++ b/sdks/java/core/src/main/java/org/apache/beam/sdk/transforms/reflect/DoFnSignature.java
@@ -284,6 +284,7 @@ default boolean observesWindow() {
   }
 
   /** A descriptor for an optional parameter of the {@link DoFn.ProcessElement} method. */
+  @SuppressWarnings("ClassInitializationDeadlock")
   public abstract static class Parameter {
 
     // Private as no extensions other than those nested here are permitted
diff --git a/sdks/java/core/src/main/java/org/apache/beam/sdk/util/UnboundedScheduledExecutorService.java b/sdks/java/core/src/main/java/org/apache/beam/sdk/util/UnboundedScheduledExecutorService.java
index 6b48c08bca0c..698a730c7c9e 100644
--- a/sdks/java/core/src/main/java/org/apache/beam/sdk/util/UnboundedScheduledExecutorService.java
+++ b/sdks/java/core/src/main/java/org/apache/beam/sdk/util/UnboundedScheduledExecutorService.java
@@ -77,6 +77,7 @@ public final class UnboundedScheduledExecutorService implements ScheduledExecuto
       value = "EQ_COMPARETO_USE_OBJECT_EQUALS",
       justification =
           "Default equals/hashCode is what we want since two scheduled tasks are only equivalent if they point to the same instance.")
+  @SuppressWarnings("NullableTypeParameter")
   final class ScheduledFutureTask<@Nullable @KeyForBottom V> extends FutureTask<V>
       implements RunnableScheduledFuture<V> {
 
@@ -373,6 +374,7 @@ public void execute(Runnable command) {
   }
 
   @Override
+  @SuppressWarnings("NullableTypeParameter")
   public Future<@Nullable ?> submit(Runnable command) {
     if (command == null) {
       throw new NullPointerException();
@@ -384,7 +386,7 @@ public void execute(Runnable command) {
 
   @Override
   /* Ignore improper flag since FB detects that ScheduledExecutorService can't have nullable V. */
-  @SuppressWarnings("override.return")
+  @SuppressWarnings({"override.return", "NullableTypeParameter"})
   public <@Nullable @KeyForBottom T> Future<T> submit(Runnable command, T result) {
     if (command == null) {
       throw new NullPointerException();
@@ -396,7 +398,7 @@ public void execute(Runnable command) {
 
   @Override
   /* Ignore improper flag since FB detects that ScheduledExecutorService can't have nullable V. */
-  @SuppressWarnings({"override.param", "override.return"})
+  @SuppressWarnings({"override.param", "override.return", "NullableTypeParameter"})
   public <@Nullable @KeyForBottom T> Future<T> submit(Callable<T> command) {
     if (command == null) {
       throw new NullPointerException();
@@ -436,6 +438,7 @@ public void execute(Runnable command) {
   }
 
   @Override
+  @SuppressWarnings("NullableTypeParameter")
   public ScheduledFuture<@Nullable ?> schedule(Runnable command, long delay, TimeUnit unit) {
     if (command == null || unit == null) {
       throw new NullPointerException();
@@ -448,7 +451,7 @@ public void execute(Runnable command) {
 
   @Override
   /* Ignore improper flag since FB detects that ScheduledExecutorService can't have nullable V. */
-  @SuppressWarnings({"override.param", "override.return"})
+  @SuppressWarnings({"override.param", "override.return", "NullableTypeParameter"})
   public <@Nullable @KeyForBottom V> ScheduledFuture<V> schedule(
       Callable<V> callable, long delay, TimeUnit unit) {
     if (callable == null || unit == null) {
@@ -460,6 +463,7 @@ public void execute(Runnable command) {
   }
 
   @Override
+  @SuppressWarnings("NullableTypeParameter")
   public ScheduledFuture<@Nullable ?> scheduleAtFixedRate(
       Runnable command, long initialDelay, long period, TimeUnit unit) {
     if (command == null || unit == null) {
@@ -476,6 +480,7 @@ public void execute(Runnable command) {
   }
 
   @Override
+  @SuppressWarnings("NullableTypeParameter")
   public ScheduledFuture<@Nullable ?> scheduleWithFixedDelay(
       Runnable command, long initialDelay, long delay, TimeUnit unit) {
     if (command == null || unit == null) {
@@ -491,6 +496,7 @@ public void execute(Runnable command) {
     return task;
   }
 
+  @SuppressWarnings("NullableTypeParameter")
   private <@Nullable @KeyForBottom T> void runNowOrScheduleInTheFuture(
       ScheduledFutureTask<T> task) {
     long nanosToWait = LongMath.saturatedSubtract(task.time, clock.nanoTime());
diff --git a/sdks/java/harness/src/main/java/org/apache/beam/fn/harness/status/BeamFnStatusClient.java b/sdks/java/harness/src/main/java/org/apache/beam/fn/harness/status/BeamFnStatusClient.java
index 7ad9b4d74c9e..8b13465d7d85 100644
--- a/sdks/java/harness/src/main/java/org/apache/beam/fn/harness/status/BeamFnStatusClient.java
+++ b/sdks/java/harness/src/main/java/org/apache/beam/fn/harness/status/BeamFnStatusClient.java
@@ -59,6 +59,7 @@ public class BeamFnStatusClient implements AutoCloseable {
   private final MemoryMonitor memoryMonitor;
   private final Cache<?, ?> cache;
 
+  @SuppressWarnings("ThreadPriorityCheck")
   @SuppressFBWarnings("SC_START_IN_CTOR") // for memory monitor thread
   public BeamFnStatusClient(
       ApiServiceDescriptor apiServiceDescriptor,
diff --git a/sdks/java/io/iceberg/src/test/java/org/apache/beam/sdk/io/iceberg/catalog/hiveutils/ScriptRunner.java b/sdks/java/io/iceberg/src/test/java/org/apache/beam/sdk/io/iceberg/catalog/hiveutils/ScriptRunner.java
index d77cf0bf74c7..261ce25148c6 100644
--- a/sdks/java/io/iceberg/src/test/java/org/apache/beam/sdk/io/iceberg/catalog/hiveutils/ScriptRunner.java
+++ b/sdks/java/io/iceberg/src/test/java/org/apache/beam/sdk/io/iceberg/catalog/hiveutils/ScriptRunner.java
@@ -34,7 +34,7 @@
  * href="https://github.com/apache/iceberg/blob/main/hive-metastore/src/test/java/org/apache/iceberg/hive/ScriptRunner.java">Iceberg's
  * integration testing</a>
  */
-@SuppressWarnings({"OperatorPrecedence", "DefaultCharset"})
+@SuppressWarnings({"OperatorPrecedence", "DefaultCharset", "ThreadPriorityCheck"})
 public class ScriptRunner {
 
   private static final String DEFAULT_DELIMITER = ";";
diff --git a/sdks/java/io/kafka/src/main/java/org/apache/beam/sdk/io/kafka/KafkaIO.java b/sdks/java/io/kafka/src/main/java/org/apache/beam/sdk/io/kafka/KafkaIO.java
index 7cb5b8504854..518319a38e32 100644
--- a/sdks/java/io/kafka/src/main/java/org/apache/beam/sdk/io/kafka/KafkaIO.java
+++ b/sdks/java/io/kafka/src/main/java/org/apache/beam/sdk/io/kafka/KafkaIO.java
@@ -3848,6 +3848,7 @@ public void populateDisplayData(DisplayData.Builder builder) {
     }
   }
 
+  @SuppressWarnings("NullableTypeParameter")
   private static class NullOnlyCoder<@Nullable T> extends AtomicCoder<T> {
     @Override
     public void encode(T value, OutputStream outStream) {
diff --git a/sdks/java/io/rrio/src/main/java/org/apache/beam/io/requestresponse/Cache.java b/sdks/java/io/rrio/src/main/java/org/apache/beam/io/requestresponse/Cache.java
index 6bbbb41de99a..9e88bda490f3 100644
--- a/sdks/java/io/rrio/src/main/java/org/apache/beam/io/requestresponse/Cache.java
+++ b/sdks/java/io/rrio/src/main/java/org/apache/beam/io/requestresponse/Cache.java
@@ -113,6 +113,7 @@ private Pair(
    * does not enforce {@link Coder#verifyDeterministic} and defers to the user to determine whether
    * to enforce this given the cache implementation.
    */
+  @SuppressWarnings("NullableTypeParameter")
   static <
           RequestT,
           @Nullable ResponseT,
@@ -138,6 +139,7 @@ private Pair(
    * href="https://redis.io/docs/get-started/faq/">Redis FAQ</a> for more information on important
    * considerations when using this method to achieve cache reads.
    */
+  @SuppressWarnings("NullableTypeParameter")
   static <RequestT, @Nullable ResponseT>
       PTransform<PCollection<RequestT>, Result<KV<RequestT, @Nullable ResponseT>>> readUsingRedis(
           RedisClient client,
@@ -178,6 +180,7 @@ PTransform<PCollection<KV<RequestT, ResponseT>>, Result<KV<RequestT, ResponseT>>
    * href="https://redis.io/docs/get-started/faq/">Redis FAQ</a> for more information on important
    * considerations when using this method to achieve cache writes.
    */
+  @SuppressWarnings("NullableTypeParameter")
   static <RequestT, ResponseT>
       PTransform<PCollection<KV<RequestT, ResponseT>>, Result<KV<RequestT, ResponseT>>>
           writeUsingRedis(
@@ -217,6 +220,7 @@ Write<RequestT, ResponseT> write(Duration expiry) {
     }
 
     /** Reads associated {@link RequestT} {@link ResponseT} using a {@link RedisClient}. */
+    @SuppressWarnings("NullableTypeParameter")
     static class Read<RequestT, @Nullable ResponseT>
         implements Caller<RequestT, KV<RequestT, @Nullable ResponseT>>, SetupTeardown {