Python CI

Fix: use new snapshot id in deleted manifest entry unless is existing entry #5727

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Run time

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Job	Run time
lint-and-test (3.11)	2m 25s
lint-and-test (3.10)	2m 30s
integration-test (3.12)	1h 3m 35s
integration-test (3.10)	30m 31s
lint-and-test (3.12)	2m 23s
integration-test (3.11)	31m 11s
integration-test (3.9)	39m 24s
lint-and-test (3.9)	2m 16s
	2h 54m 15s