Python CI

Fix: use new snapshot id in deleted manifest entry unless is existing entry #5881

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Run time

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Job	Run time
integration-test (3.11)	16m 5s
integration-test (3.10)	11m 52s
lint-and-test (3.11)	1m 28s
lint-and-test (3.10)	1m 42s
integration-test (3.12)	12m 49s
lint-and-test (3.12)	1m 34s
integration-test (3.9)	16m 9s
lint-and-test (3.9)	1m 42s
integration-test (3.10)	11m 52s
lint-and-test (3.11)	4m 17s
lint-and-test (3.10)	1m 42s
integration-test (3.9)	16m 9s
lint-and-test (3.12)	1m 34s
integration-test (3.11)	16m 5s
integration-test (3.12)	12m 49s
lint-and-test (3.9)	1m 42s
lint-and-test (3.10)	4m 23s
lint-and-test (3.11)	4m 17s
integration-test (3.11)	16m 5s
integration-test (3.9)	16m 9s
integration-test (3.10)	11m 52s
lint-and-test (3.9)	1m 42s
lint-and-test (3.12)	1m 34s
integration-test (3.12)	12m 49s
lint-and-test (3.10)	4m 2s
lint-and-test (3.12)	4m 3s
lint-and-test (3.11)	4m 7s
integration-test (3.9)	16m 21s
integration-test (3.11)	12m 19s
integration-test (3.10)	12m 29s
lint-and-test (3.9)	4m 14s
integration-test (3.12)	11m 58s
	4h 27m 55s