[CI] Cherry pick dependabot updates from #3019 excluding pypa/gh-action-pypi-publish (#3023)

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: jbampton

.github/workflows/codeql.yml

@@ -45,12 +45,12 @@ jobs:
           persist-credentials: false
 
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@9e0d7b8d25671d64c341c19c0152d693099fb5ba # v4.35.5
+        uses: github/codeql-action/init@7211b7c8077ea37d8641b6271f6a365a22a5fbfa # v4.36.0
         with:
           languages: ${{ matrix.language }}
           build-mode: none
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@9e0d7b8d25671d64c341c19c0152d693099fb5ba # v4.35.5
+        uses: github/codeql-action/analyze@7211b7c8077ea37d8641b6271f6a365a22a5fbfa # v4.36.0
         with:
           category: 'Security'

.github/workflows/docker-build.yml

@@ -66,7 +66,7 @@ jobs:
           distribution: 'zulu'
           java-version: 17
       - name: Cache Maven packages
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: ~/.m2
           key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}

.github/workflows/docs.yml

@@ -54,7 +54,7 @@ jobs:
       - name: Compile ScalaDoc
         run: mvn generate-sources scala:doc -pl !common,!snowflake,!flink && mkdir -p docs/api/scaladoc/spark && cp -r spark/common/target/site/scaladocs/* docs/api/scaladoc/spark
       - name: Set up Node.js
-        uses: actions/setup-node@53b83947a5a98c8d113130e565377fae1a50d02f # v6.3.0
+        uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
         with:
           node-version: '18'
           cache: 'npm'
@@ -71,16 +71,16 @@ jobs:
         with:
           python-version: '3.11'
       - name: Install uv
-        uses: astral-sh/setup-uv@37802adc94f370d6bfd71619e3f0bf239e1f3b78 # v7.6.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
       - name: Sync doc environment
         run: uv sync --group docs
       - run: sudo apt update
-      - uses: r-lib/actions/setup-r@v2.11.4
+      - uses: r-lib/actions/setup-r@v2.12.0
         with:
           r-version: release
           use-public-rspm: true
       - name: Query R dependencies
-        uses: r-lib/actions/setup-r-dependencies@v2.11.4
+        uses: r-lib/actions/setup-r-dependencies@v2.12.0
         with:
           cache: true
           extra-packages: |
@@ -121,25 +121,25 @@ jobs:
           fi
       - run: mkdir staging
       - run: cp -r site/* staging/
-      - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: generated-docs
           path: staging
       - name: Cache Python packages
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: ~/.cache/pip
           key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
           restore-keys: |
             ${{ runner.os }}-pip-
       - name: Cache Maven packages
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: ~/.m2
           key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
           restore-keys: ${{ runner.os }}-m2
       - name: Cache Node modules
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: docs-overrides/node_modules
           key: ${{ runner.os }}-node-${{ hashFiles('docs-overrides/package-lock.json') }}

.github/workflows/example.yml

@@ -74,14 +74,14 @@ jobs:
       - run: sudo apt-get update
       - run: sudo apt-get install sbt
       - name: Cache SBT
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: |
             ~/.ivy2/cache
             ~/.sbt
           key: ${{ runner.os }}-sbt-${{ hashFiles('**/build.sbt') }}
       - name: Cache Maven packages
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: ~/.m2
           key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}

.github/workflows/java.yml

@@ -96,7 +96,7 @@ jobs:
         with:
           python-version: '3.10'
       - name: Cache Maven packages
-        uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
+        uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
         with:
           path: ~/.m2
           key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
@@ -118,7 +118,7 @@ jobs:
       - run: cp spark-shaded/target/sedona-*.jar staging
       - run: |
           [ -d "flink-shaded/target/" ] && cp flink-shaded/target/sedona-*.jar staging 2>/dev/null || true
-      - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: generated-jars_spark-${{ matrix.spark }}_scala-${{ matrix.scala }}_jdk-${{ matrix.jdk }}
           path: staging

.github/workflows/pre-commit-manual.yml

@@ -42,7 +42,7 @@ jobs:
         uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         with:
           persist-credentials: false
-      - uses: j178/prek-action@6ad80277337ad479fe43bd70701c3f7f8aa74db3 # v2.0.3
+      - uses: j178/prek-action@bdca6f102f98e2b4c7029491a53dfd366469e33d # v2.0.4
         with:
           install-only: true
       - name: Run manual pre-commit hooks

.github/workflows/pre-commit.yml

@@ -42,6 +42,6 @@ jobs:
         uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         with:
           persist-credentials: false
-      - uses: j178/prek-action@6ad80277337ad479fe43bd70701c3f7f8aa74db3 # v2.0.3
+      - uses: j178/prek-action@bdca6f102f98e2b4c7029491a53dfd366469e33d # v2.0.4
         with:
           extra-args: --all-files

.github/workflows/pyflink.yml

@@ -64,7 +64,7 @@ jobs:
         with:
           python-version: ${{ matrix.python }}
       - name: Install uv
-        uses: astral-sh/setup-uv@37802adc94f370d6bfd71619e3f0bf239e1f3b78 # v7.6.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
       - run: mvn package -pl "org.apache.sedona:sedona-flink-shaded_2.12" -am -DskipTests
       - name: Install python package + flink extra
         run: |

.github/workflows/python-extension.yml

@@ -65,7 +65,7 @@ jobs:
         with:
           python-version: ${{ matrix.python }}
       - name: Install uv
-        uses: astral-sh/setup-uv@37802adc94f370d6bfd71619e3f0bf239e1f3b78 # v7.6.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
         with:
           version: '0.9.22'
       - name: Install dependencies (dev)

.github/workflows/python-wheel.yml

@@ -72,15 +72,15 @@ jobs:
           image: tonistiigi/binfmt:qemu-v8.1.5
           platforms: all
       - name: Build wheels
-        uses: pypa/cibuildwheel@ee02a1537ce3071a004a6b08c41e72f0fdc42d9a # v3.4.0
+        uses: pypa/cibuildwheel@8d2b08b68458a16aeb24b64e68a09ab1c8e82084 # v3.4.1
         env:
           CIBW_SKIP: 'pp* *musl*'
           CIBW_ARCHS_LINUX: 'x86_64 aarch64'
           CIBW_ARCHS_WINDOWS: 'AMD64 ARM64'
           CIBW_ARCHS_MACOS: 'x86_64 arm64'
         with:
           package-dir: python
-      - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
           path: ./wheelhouse/*.whl
@@ -94,12 +94,12 @@ jobs:
           persist-credentials: false
 
       - name: Install uv
-        uses: astral-sh/setup-uv@37802adc94f370d6bfd71619e3f0bf239e1f3b78 # v7.6.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
 
       - name: Build sdist
         run: cd python && uv build --sdist
 
-      - uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7.0.0
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
         with:
           name: cibw-sdist
           path: python/dist/*.tar.gz